diff tools.yaml @ 0:ddb2e4c51634 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools.yaml	Fri May 19 05:02:29 2017 -0400
@@ -0,0 +1,802 @@
+---
+# This is a sample file to be used as a reference for populating a list of
+# tools that you wish to install into Galaxy from a Tool Shed via the
+# `install_tool_shed_tools.py` script.
+#
+# For each tool you want to install, you must provide the following keys:
+#  * name: this is is the name of the tool to install
+#  * owner: owner of the Tool Shed repository from where the tools is being
+#           installed
+# Further, you need to provide **one** of the following two keys:
+#  * tool_panel_section_id: ID of the tool panel section where you want the
+#                           tool to be installed. The section ID can be found
+#                           in Galaxy's `shed_tool_conf.xml` config file. Note
+#                           that the specified section must exist in this file.
+#                           Otherwise, the tool will be installed outside any
+#                           section.
+#  * tool_panel_section_label: Display label of a tool panel section where
+#                              you want the tool to be installed. If it does not
+#                              exist, this section will be created on the target
+#                              Galaxy instance (note that this is different than
+#                              when using the ID).
+#                              Multi-word labels need to be placed in quotes.
+#                              Each label will have a corresponding ID created;
+#                              the ID will be an all lowercase version of the
+#                              label, with multiple words joined with
+#                              underscores (e.g., 'BED tools' -> 'bed_tools').
+#
+# Tou can also specify the following optional keys to further define the
+# installation properties:
+#  * tool_shed_url: the URL of the Tool Shed from where the tool should be
+#                   installed. (default: https://toolshed.g2.bx.psu.edu)
+#  * revisions: a list of revisions of the tool, all of which will attempt to
+#               be installed. (default: latest)
+#  * install_tool_dependencies: True or False - whether to install tool
+#                               dependencies or not. (default: True)
+#  * install_repository_dependencies: True or False - whether to install repo
+#                               dependencies or not. (default: True)
+
+
+# pip install ephemeris -U
+# shed_install -t tools.yaml -a <galaxy admin API key> -g <galaxy instance>
+# (the latter two can also be configure inside the yaml with following two lines)
+#api_key: admin
+#galaxy_instance: http://localhost:8080/
+
+tools:
+- name: mothur_align_check
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_align_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_amova
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_anosim
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_bin_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_bellerophon
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_ccode
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_check
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_perseus
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_pintail
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_slayer
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chimera_uchime
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_chop_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_classify_otu
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_classify_rf
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_classify_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_classify_tree
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_clearcut
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_cluster_classic
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_cluster_fragments
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_cluster_split
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_cluster
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_collect_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_collect_single
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_consensus_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_cooccurrence
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_corr_axes
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_count_groups
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_count_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_create_database
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_degap_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_deunique_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_deunique_tree
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_dist_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_dist_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_fastq_info
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_filter_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_filter_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_communitytype
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_coremicrobiome
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_dists
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_groups
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_group
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_label
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_lineage
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_mimarkspackage
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_otulabels
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_otulist
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_oturep
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_otus
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_rabund
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_relabund
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_sabund
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_get_sharedseqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_hcluster
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_heatmap_bin
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_heatmap_sim
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_homova
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_indicator
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_lefse
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_libshuff
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_list_otulabels
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_list_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_biom
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_contigs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_design
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_fastq
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_group
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_lefse
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_lookup
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_make_sra
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_mantel
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_merge_files
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_merge_groups
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_merge_sfffiles
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_merge_taxsummary
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_metastats
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_mimarks_attributes
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_nmds
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_normalize_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_otu_association
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_otu_hierarchy
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_pairwise_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_parse_list
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_parsimony
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_pca
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_pcoa
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_pcr_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_phylo_diversity
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_phylotype
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_pre_cluster
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_primer_design
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_rarefaction_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_rarefaction_single
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_dists
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_groups
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_lineage
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_otulabels
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_otus
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_rare
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_remove_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_reverse_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_screen_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_sens_spec
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_seq_error
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_sffinfo
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_shhh_flows
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_shhh_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_sort_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_split_abund
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_split_groups
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_sub_sample
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_summary_qual
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_summary_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_summary_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_summary_single
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_summary_tax
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_tree_shared
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_trim_flows
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_trim_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_unifrac_unweighted
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_unifrac_weighted
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_unique_seqs
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu
+- name: mothur_venn
+  install_resolver_dependencies: true
+  install_tool_dependencies: true
+  owner: iuc
+  tool_panel_section_label: "Mothur"
+  tool_shed_url: https://toolshed.g2.bx.psu.edu