Mercurial > repos > iuc > mothur_classify_rf
comparison tools.yaml @ 0:4f4e85809481 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author | iuc |
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date | Fri, 19 May 2017 05:45:34 -0400 |
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2 # This is a sample file to be used as a reference for populating a list of | |
3 # tools that you wish to install into Galaxy from a Tool Shed via the | |
4 # `install_tool_shed_tools.py` script. | |
5 # | |
6 # For each tool you want to install, you must provide the following keys: | |
7 # * name: this is is the name of the tool to install | |
8 # * owner: owner of the Tool Shed repository from where the tools is being | |
9 # installed | |
10 # Further, you need to provide **one** of the following two keys: | |
11 # * tool_panel_section_id: ID of the tool panel section where you want the | |
12 # tool to be installed. The section ID can be found | |
13 # in Galaxy's `shed_tool_conf.xml` config file. Note | |
14 # that the specified section must exist in this file. | |
15 # Otherwise, the tool will be installed outside any | |
16 # section. | |
17 # * tool_panel_section_label: Display label of a tool panel section where | |
18 # you want the tool to be installed. If it does not | |
19 # exist, this section will be created on the target | |
20 # Galaxy instance (note that this is different than | |
21 # when using the ID). | |
22 # Multi-word labels need to be placed in quotes. | |
23 # Each label will have a corresponding ID created; | |
24 # the ID will be an all lowercase version of the | |
25 # label, with multiple words joined with | |
26 # underscores (e.g., 'BED tools' -> 'bed_tools'). | |
27 # | |
28 # Tou can also specify the following optional keys to further define the | |
29 # installation properties: | |
30 # * tool_shed_url: the URL of the Tool Shed from where the tool should be | |
31 # installed. (default: https://toolshed.g2.bx.psu.edu) | |
32 # * revisions: a list of revisions of the tool, all of which will attempt to | |
33 # be installed. (default: latest) | |
34 # * install_tool_dependencies: True or False - whether to install tool | |
35 # dependencies or not. (default: True) | |
36 # * install_repository_dependencies: True or False - whether to install repo | |
37 # dependencies or not. (default: True) | |
38 | |
39 | |
40 # pip install ephemeris -U | |
41 # shed_install -t tools.yaml -a <galaxy admin API key> -g <galaxy instance> | |
42 # (the latter two can also be configure inside the yaml with following two lines) | |
43 #api_key: admin | |
44 #galaxy_instance: http://localhost:8080/ | |
45 | |
46 tools: | |
47 - name: mothur_align_check | |
48 install_resolver_dependencies: true | |
49 install_tool_dependencies: true | |
50 owner: iuc | |
51 tool_panel_section_label: "Mothur" | |
52 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
53 - name: mothur_align_seqs | |
54 install_resolver_dependencies: true | |
55 install_tool_dependencies: true | |
56 owner: iuc | |
57 tool_panel_section_label: "Mothur" | |
58 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
59 - name: mothur_amova | |
60 install_resolver_dependencies: true | |
61 install_tool_dependencies: true | |
62 owner: iuc | |
63 tool_panel_section_label: "Mothur" | |
64 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
65 - name: mothur_anosim | |
66 install_resolver_dependencies: true | |
67 install_tool_dependencies: true | |
68 owner: iuc | |
69 tool_panel_section_label: "Mothur" | |
70 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
71 - name: mothur_bin_seqs | |
72 install_resolver_dependencies: true | |
73 install_tool_dependencies: true | |
74 owner: iuc | |
75 tool_panel_section_label: "Mothur" | |
76 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
77 - name: mothur_chimera_bellerophon | |
78 install_resolver_dependencies: true | |
79 install_tool_dependencies: true | |
80 owner: iuc | |
81 tool_panel_section_label: "Mothur" | |
82 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
83 - name: mothur_chimera_ccode | |
84 install_resolver_dependencies: true | |
85 install_tool_dependencies: true | |
86 owner: iuc | |
87 tool_panel_section_label: "Mothur" | |
88 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
89 - name: mothur_chimera_check | |
90 install_resolver_dependencies: true | |
91 install_tool_dependencies: true | |
92 owner: iuc | |
93 tool_panel_section_label: "Mothur" | |
94 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
95 - name: mothur_chimera_perseus | |
96 install_resolver_dependencies: true | |
97 install_tool_dependencies: true | |
98 owner: iuc | |
99 tool_panel_section_label: "Mothur" | |
100 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
101 - name: mothur_chimera_pintail | |
102 install_resolver_dependencies: true | |
103 install_tool_dependencies: true | |
104 owner: iuc | |
105 tool_panel_section_label: "Mothur" | |
106 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
107 - name: mothur_chimera_slayer | |
108 install_resolver_dependencies: true | |
109 install_tool_dependencies: true | |
110 owner: iuc | |
111 tool_panel_section_label: "Mothur" | |
112 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
113 - name: mothur_chimera_uchime | |
114 install_resolver_dependencies: true | |
115 install_tool_dependencies: true | |
116 owner: iuc | |
117 tool_panel_section_label: "Mothur" | |
118 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
119 - name: mothur_chop_seqs | |
120 install_resolver_dependencies: true | |
121 install_tool_dependencies: true | |
122 owner: iuc | |
123 tool_panel_section_label: "Mothur" | |
124 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
125 - name: mothur_classify_otu | |
126 install_resolver_dependencies: true | |
127 install_tool_dependencies: true | |
128 owner: iuc | |
129 tool_panel_section_label: "Mothur" | |
130 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
131 - name: mothur_classify_rf | |
132 install_resolver_dependencies: true | |
133 install_tool_dependencies: true | |
134 owner: iuc | |
135 tool_panel_section_label: "Mothur" | |
136 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
137 - name: mothur_classify_seqs | |
138 install_resolver_dependencies: true | |
139 install_tool_dependencies: true | |
140 owner: iuc | |
141 tool_panel_section_label: "Mothur" | |
142 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
143 - name: mothur_classify_tree | |
144 install_resolver_dependencies: true | |
145 install_tool_dependencies: true | |
146 owner: iuc | |
147 tool_panel_section_label: "Mothur" | |
148 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
149 - name: mothur_clearcut | |
150 install_resolver_dependencies: true | |
151 install_tool_dependencies: true | |
152 owner: iuc | |
153 tool_panel_section_label: "Mothur" | |
154 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
155 - name: mothur_cluster_classic | |
156 install_resolver_dependencies: true | |
157 install_tool_dependencies: true | |
158 owner: iuc | |
159 tool_panel_section_label: "Mothur" | |
160 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
161 - name: mothur_cluster_fragments | |
162 install_resolver_dependencies: true | |
163 install_tool_dependencies: true | |
164 owner: iuc | |
165 tool_panel_section_label: "Mothur" | |
166 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
167 - name: mothur_cluster_split | |
168 install_resolver_dependencies: true | |
169 install_tool_dependencies: true | |
170 owner: iuc | |
171 tool_panel_section_label: "Mothur" | |
172 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
173 - name: mothur_cluster | |
174 install_resolver_dependencies: true | |
175 install_tool_dependencies: true | |
176 owner: iuc | |
177 tool_panel_section_label: "Mothur" | |
178 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
179 - name: mothur_collect_shared | |
180 install_resolver_dependencies: true | |
181 install_tool_dependencies: true | |
182 owner: iuc | |
183 tool_panel_section_label: "Mothur" | |
184 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
185 - name: mothur_collect_single | |
186 install_resolver_dependencies: true | |
187 install_tool_dependencies: true | |
188 owner: iuc | |
189 tool_panel_section_label: "Mothur" | |
190 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
191 - name: mothur_consensus_seqs | |
192 install_resolver_dependencies: true | |
193 install_tool_dependencies: true | |
194 owner: iuc | |
195 tool_panel_section_label: "Mothur" | |
196 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
197 - name: mothur_cooccurrence | |
198 install_resolver_dependencies: true | |
199 install_tool_dependencies: true | |
200 owner: iuc | |
201 tool_panel_section_label: "Mothur" | |
202 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
203 - name: mothur_corr_axes | |
204 install_resolver_dependencies: true | |
205 install_tool_dependencies: true | |
206 owner: iuc | |
207 tool_panel_section_label: "Mothur" | |
208 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
209 - name: mothur_count_groups | |
210 install_resolver_dependencies: true | |
211 install_tool_dependencies: true | |
212 owner: iuc | |
213 tool_panel_section_label: "Mothur" | |
214 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
215 - name: mothur_count_seqs | |
216 install_resolver_dependencies: true | |
217 install_tool_dependencies: true | |
218 owner: iuc | |
219 tool_panel_section_label: "Mothur" | |
220 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
221 - name: mothur_create_database | |
222 install_resolver_dependencies: true | |
223 install_tool_dependencies: true | |
224 owner: iuc | |
225 tool_panel_section_label: "Mothur" | |
226 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
227 - name: mothur_degap_seqs | |
228 install_resolver_dependencies: true | |
229 install_tool_dependencies: true | |
230 owner: iuc | |
231 tool_panel_section_label: "Mothur" | |
232 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
233 - name: mothur_deunique_seqs | |
234 install_resolver_dependencies: true | |
235 install_tool_dependencies: true | |
236 owner: iuc | |
237 tool_panel_section_label: "Mothur" | |
238 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
239 - name: mothur_deunique_tree | |
240 install_resolver_dependencies: true | |
241 install_tool_dependencies: true | |
242 owner: iuc | |
243 tool_panel_section_label: "Mothur" | |
244 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
245 - name: mothur_dist_seqs | |
246 install_resolver_dependencies: true | |
247 install_tool_dependencies: true | |
248 owner: iuc | |
249 tool_panel_section_label: "Mothur" | |
250 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
251 - name: mothur_dist_shared | |
252 install_resolver_dependencies: true | |
253 install_tool_dependencies: true | |
254 owner: iuc | |
255 tool_panel_section_label: "Mothur" | |
256 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
257 - name: mothur_fastq_info | |
258 install_resolver_dependencies: true | |
259 install_tool_dependencies: true | |
260 owner: iuc | |
261 tool_panel_section_label: "Mothur" | |
262 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
263 - name: mothur_filter_seqs | |
264 install_resolver_dependencies: true | |
265 install_tool_dependencies: true | |
266 owner: iuc | |
267 tool_panel_section_label: "Mothur" | |
268 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
269 - name: mothur_filter_shared | |
270 install_resolver_dependencies: true | |
271 install_tool_dependencies: true | |
272 owner: iuc | |
273 tool_panel_section_label: "Mothur" | |
274 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
275 - name: mothur_get_communitytype | |
276 install_resolver_dependencies: true | |
277 install_tool_dependencies: true | |
278 owner: iuc | |
279 tool_panel_section_label: "Mothur" | |
280 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
281 - name: mothur_get_coremicrobiome | |
282 install_resolver_dependencies: true | |
283 install_tool_dependencies: true | |
284 owner: iuc | |
285 tool_panel_section_label: "Mothur" | |
286 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
287 - name: mothur_get_dists | |
288 install_resolver_dependencies: true | |
289 install_tool_dependencies: true | |
290 owner: iuc | |
291 tool_panel_section_label: "Mothur" | |
292 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
293 - name: mothur_get_groups | |
294 install_resolver_dependencies: true | |
295 install_tool_dependencies: true | |
296 owner: iuc | |
297 tool_panel_section_label: "Mothur" | |
298 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
299 - name: mothur_get_group | |
300 install_resolver_dependencies: true | |
301 install_tool_dependencies: true | |
302 owner: iuc | |
303 tool_panel_section_label: "Mothur" | |
304 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
305 - name: mothur_get_label | |
306 install_resolver_dependencies: true | |
307 install_tool_dependencies: true | |
308 owner: iuc | |
309 tool_panel_section_label: "Mothur" | |
310 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
311 - name: mothur_get_lineage | |
312 install_resolver_dependencies: true | |
313 install_tool_dependencies: true | |
314 owner: iuc | |
315 tool_panel_section_label: "Mothur" | |
316 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
317 - name: mothur_get_mimarkspackage | |
318 install_resolver_dependencies: true | |
319 install_tool_dependencies: true | |
320 owner: iuc | |
321 tool_panel_section_label: "Mothur" | |
322 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
323 - name: mothur_get_otulabels | |
324 install_resolver_dependencies: true | |
325 install_tool_dependencies: true | |
326 owner: iuc | |
327 tool_panel_section_label: "Mothur" | |
328 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
329 - name: mothur_get_otulist | |
330 install_resolver_dependencies: true | |
331 install_tool_dependencies: true | |
332 owner: iuc | |
333 tool_panel_section_label: "Mothur" | |
334 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
335 - name: mothur_get_oturep | |
336 install_resolver_dependencies: true | |
337 install_tool_dependencies: true | |
338 owner: iuc | |
339 tool_panel_section_label: "Mothur" | |
340 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
341 - name: mothur_get_otus | |
342 install_resolver_dependencies: true | |
343 install_tool_dependencies: true | |
344 owner: iuc | |
345 tool_panel_section_label: "Mothur" | |
346 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
347 - name: mothur_get_rabund | |
348 install_resolver_dependencies: true | |
349 install_tool_dependencies: true | |
350 owner: iuc | |
351 tool_panel_section_label: "Mothur" | |
352 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
353 - name: mothur_get_relabund | |
354 install_resolver_dependencies: true | |
355 install_tool_dependencies: true | |
356 owner: iuc | |
357 tool_panel_section_label: "Mothur" | |
358 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
359 - name: mothur_get_sabund | |
360 install_resolver_dependencies: true | |
361 install_tool_dependencies: true | |
362 owner: iuc | |
363 tool_panel_section_label: "Mothur" | |
364 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
365 - name: mothur_get_seqs | |
366 install_resolver_dependencies: true | |
367 install_tool_dependencies: true | |
368 owner: iuc | |
369 tool_panel_section_label: "Mothur" | |
370 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
371 - name: mothur_get_sharedseqs | |
372 install_resolver_dependencies: true | |
373 install_tool_dependencies: true | |
374 owner: iuc | |
375 tool_panel_section_label: "Mothur" | |
376 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
377 - name: mothur_hcluster | |
378 install_resolver_dependencies: true | |
379 install_tool_dependencies: true | |
380 owner: iuc | |
381 tool_panel_section_label: "Mothur" | |
382 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
383 - name: mothur_heatmap_bin | |
384 install_resolver_dependencies: true | |
385 install_tool_dependencies: true | |
386 owner: iuc | |
387 tool_panel_section_label: "Mothur" | |
388 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
389 - name: mothur_heatmap_sim | |
390 install_resolver_dependencies: true | |
391 install_tool_dependencies: true | |
392 owner: iuc | |
393 tool_panel_section_label: "Mothur" | |
394 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
395 - name: mothur_homova | |
396 install_resolver_dependencies: true | |
397 install_tool_dependencies: true | |
398 owner: iuc | |
399 tool_panel_section_label: "Mothur" | |
400 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
401 - name: mothur_indicator | |
402 install_resolver_dependencies: true | |
403 install_tool_dependencies: true | |
404 owner: iuc | |
405 tool_panel_section_label: "Mothur" | |
406 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
407 - name: mothur_lefse | |
408 install_resolver_dependencies: true | |
409 install_tool_dependencies: true | |
410 owner: iuc | |
411 tool_panel_section_label: "Mothur" | |
412 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
413 - name: mothur_libshuff | |
414 install_resolver_dependencies: true | |
415 install_tool_dependencies: true | |
416 owner: iuc | |
417 tool_panel_section_label: "Mothur" | |
418 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
419 - name: mothur_list_otulabels | |
420 install_resolver_dependencies: true | |
421 install_tool_dependencies: true | |
422 owner: iuc | |
423 tool_panel_section_label: "Mothur" | |
424 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
425 - name: mothur_list_seqs | |
426 install_resolver_dependencies: true | |
427 install_tool_dependencies: true | |
428 owner: iuc | |
429 tool_panel_section_label: "Mothur" | |
430 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
431 - name: mothur_make_biom | |
432 install_resolver_dependencies: true | |
433 install_tool_dependencies: true | |
434 owner: iuc | |
435 tool_panel_section_label: "Mothur" | |
436 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
437 - name: mothur_make_contigs | |
438 install_resolver_dependencies: true | |
439 install_tool_dependencies: true | |
440 owner: iuc | |
441 tool_panel_section_label: "Mothur" | |
442 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
443 - name: mothur_make_design | |
444 install_resolver_dependencies: true | |
445 install_tool_dependencies: true | |
446 owner: iuc | |
447 tool_panel_section_label: "Mothur" | |
448 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
449 - name: mothur_make_fastq | |
450 install_resolver_dependencies: true | |
451 install_tool_dependencies: true | |
452 owner: iuc | |
453 tool_panel_section_label: "Mothur" | |
454 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
455 - name: mothur_make_group | |
456 install_resolver_dependencies: true | |
457 install_tool_dependencies: true | |
458 owner: iuc | |
459 tool_panel_section_label: "Mothur" | |
460 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
461 - name: mothur_make_lefse | |
462 install_resolver_dependencies: true | |
463 install_tool_dependencies: true | |
464 owner: iuc | |
465 tool_panel_section_label: "Mothur" | |
466 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
467 - name: mothur_make_lookup | |
468 install_resolver_dependencies: true | |
469 install_tool_dependencies: true | |
470 owner: iuc | |
471 tool_panel_section_label: "Mothur" | |
472 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
473 - name: mothur_make_shared | |
474 install_resolver_dependencies: true | |
475 install_tool_dependencies: true | |
476 owner: iuc | |
477 tool_panel_section_label: "Mothur" | |
478 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
479 - name: mothur_make_sra | |
480 install_resolver_dependencies: true | |
481 install_tool_dependencies: true | |
482 owner: iuc | |
483 tool_panel_section_label: "Mothur" | |
484 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
485 - name: mothur_mantel | |
486 install_resolver_dependencies: true | |
487 install_tool_dependencies: true | |
488 owner: iuc | |
489 tool_panel_section_label: "Mothur" | |
490 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
491 - name: mothur_merge_files | |
492 install_resolver_dependencies: true | |
493 install_tool_dependencies: true | |
494 owner: iuc | |
495 tool_panel_section_label: "Mothur" | |
496 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
497 - name: mothur_merge_groups | |
498 install_resolver_dependencies: true | |
499 install_tool_dependencies: true | |
500 owner: iuc | |
501 tool_panel_section_label: "Mothur" | |
502 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
503 - name: mothur_merge_sfffiles | |
504 install_resolver_dependencies: true | |
505 install_tool_dependencies: true | |
506 owner: iuc | |
507 tool_panel_section_label: "Mothur" | |
508 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
509 - name: mothur_merge_taxsummary | |
510 install_resolver_dependencies: true | |
511 install_tool_dependencies: true | |
512 owner: iuc | |
513 tool_panel_section_label: "Mothur" | |
514 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
515 - name: mothur_metastats | |
516 install_resolver_dependencies: true | |
517 install_tool_dependencies: true | |
518 owner: iuc | |
519 tool_panel_section_label: "Mothur" | |
520 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
521 - name: mothur_mimarks_attributes | |
522 install_resolver_dependencies: true | |
523 install_tool_dependencies: true | |
524 owner: iuc | |
525 tool_panel_section_label: "Mothur" | |
526 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
527 - name: mothur_nmds | |
528 install_resolver_dependencies: true | |
529 install_tool_dependencies: true | |
530 owner: iuc | |
531 tool_panel_section_label: "Mothur" | |
532 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
533 - name: mothur_normalize_shared | |
534 install_resolver_dependencies: true | |
535 install_tool_dependencies: true | |
536 owner: iuc | |
537 tool_panel_section_label: "Mothur" | |
538 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
539 - name: mothur_otu_association | |
540 install_resolver_dependencies: true | |
541 install_tool_dependencies: true | |
542 owner: iuc | |
543 tool_panel_section_label: "Mothur" | |
544 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
545 - name: mothur_otu_hierarchy | |
546 install_resolver_dependencies: true | |
547 install_tool_dependencies: true | |
548 owner: iuc | |
549 tool_panel_section_label: "Mothur" | |
550 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
551 - name: mothur_pairwise_seqs | |
552 install_resolver_dependencies: true | |
553 install_tool_dependencies: true | |
554 owner: iuc | |
555 tool_panel_section_label: "Mothur" | |
556 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
557 - name: mothur_parse_list | |
558 install_resolver_dependencies: true | |
559 install_tool_dependencies: true | |
560 owner: iuc | |
561 tool_panel_section_label: "Mothur" | |
562 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
563 - name: mothur_parsimony | |
564 install_resolver_dependencies: true | |
565 install_tool_dependencies: true | |
566 owner: iuc | |
567 tool_panel_section_label: "Mothur" | |
568 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
569 - name: mothur_pca | |
570 install_resolver_dependencies: true | |
571 install_tool_dependencies: true | |
572 owner: iuc | |
573 tool_panel_section_label: "Mothur" | |
574 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
575 - name: mothur_pcoa | |
576 install_resolver_dependencies: true | |
577 install_tool_dependencies: true | |
578 owner: iuc | |
579 tool_panel_section_label: "Mothur" | |
580 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
581 - name: mothur_pcr_seqs | |
582 install_resolver_dependencies: true | |
583 install_tool_dependencies: true | |
584 owner: iuc | |
585 tool_panel_section_label: "Mothur" | |
586 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
587 - name: mothur_phylo_diversity | |
588 install_resolver_dependencies: true | |
589 install_tool_dependencies: true | |
590 owner: iuc | |
591 tool_panel_section_label: "Mothur" | |
592 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
593 - name: mothur_phylotype | |
594 install_resolver_dependencies: true | |
595 install_tool_dependencies: true | |
596 owner: iuc | |
597 tool_panel_section_label: "Mothur" | |
598 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
599 - name: mothur_pre_cluster | |
600 install_resolver_dependencies: true | |
601 install_tool_dependencies: true | |
602 owner: iuc | |
603 tool_panel_section_label: "Mothur" | |
604 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
605 - name: mothur_primer_design | |
606 install_resolver_dependencies: true | |
607 install_tool_dependencies: true | |
608 owner: iuc | |
609 tool_panel_section_label: "Mothur" | |
610 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
611 - name: mothur_rarefaction_shared | |
612 install_resolver_dependencies: true | |
613 install_tool_dependencies: true | |
614 owner: iuc | |
615 tool_panel_section_label: "Mothur" | |
616 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
617 - name: mothur_rarefaction_single | |
618 install_resolver_dependencies: true | |
619 install_tool_dependencies: true | |
620 owner: iuc | |
621 tool_panel_section_label: "Mothur" | |
622 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
623 - name: mothur_remove_dists | |
624 install_resolver_dependencies: true | |
625 install_tool_dependencies: true | |
626 owner: iuc | |
627 tool_panel_section_label: "Mothur" | |
628 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
629 - name: mothur_remove_groups | |
630 install_resolver_dependencies: true | |
631 install_tool_dependencies: true | |
632 owner: iuc | |
633 tool_panel_section_label: "Mothur" | |
634 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
635 - name: mothur_remove_lineage | |
636 install_resolver_dependencies: true | |
637 install_tool_dependencies: true | |
638 owner: iuc | |
639 tool_panel_section_label: "Mothur" | |
640 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
641 - name: mothur_remove_otulabels | |
642 install_resolver_dependencies: true | |
643 install_tool_dependencies: true | |
644 owner: iuc | |
645 tool_panel_section_label: "Mothur" | |
646 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
647 - name: mothur_remove_otus | |
648 install_resolver_dependencies: true | |
649 install_tool_dependencies: true | |
650 owner: iuc | |
651 tool_panel_section_label: "Mothur" | |
652 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
653 - name: mothur_remove_rare | |
654 install_resolver_dependencies: true | |
655 install_tool_dependencies: true | |
656 owner: iuc | |
657 tool_panel_section_label: "Mothur" | |
658 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
659 - name: mothur_remove_seqs | |
660 install_resolver_dependencies: true | |
661 install_tool_dependencies: true | |
662 owner: iuc | |
663 tool_panel_section_label: "Mothur" | |
664 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
665 - name: mothur_reverse_seqs | |
666 install_resolver_dependencies: true | |
667 install_tool_dependencies: true | |
668 owner: iuc | |
669 tool_panel_section_label: "Mothur" | |
670 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
671 - name: mothur_screen_seqs | |
672 install_resolver_dependencies: true | |
673 install_tool_dependencies: true | |
674 owner: iuc | |
675 tool_panel_section_label: "Mothur" | |
676 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
677 - name: mothur_sens_spec | |
678 install_resolver_dependencies: true | |
679 install_tool_dependencies: true | |
680 owner: iuc | |
681 tool_panel_section_label: "Mothur" | |
682 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
683 - name: mothur_seq_error | |
684 install_resolver_dependencies: true | |
685 install_tool_dependencies: true | |
686 owner: iuc | |
687 tool_panel_section_label: "Mothur" | |
688 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
689 - name: mothur_sffinfo | |
690 install_resolver_dependencies: true | |
691 install_tool_dependencies: true | |
692 owner: iuc | |
693 tool_panel_section_label: "Mothur" | |
694 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
695 - name: mothur_shhh_flows | |
696 install_resolver_dependencies: true | |
697 install_tool_dependencies: true | |
698 owner: iuc | |
699 tool_panel_section_label: "Mothur" | |
700 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
701 - name: mothur_shhh_seqs | |
702 install_resolver_dependencies: true | |
703 install_tool_dependencies: true | |
704 owner: iuc | |
705 tool_panel_section_label: "Mothur" | |
706 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
707 - name: mothur_sort_seqs | |
708 install_resolver_dependencies: true | |
709 install_tool_dependencies: true | |
710 owner: iuc | |
711 tool_panel_section_label: "Mothur" | |
712 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
713 - name: mothur_split_abund | |
714 install_resolver_dependencies: true | |
715 install_tool_dependencies: true | |
716 owner: iuc | |
717 tool_panel_section_label: "Mothur" | |
718 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
719 - name: mothur_split_groups | |
720 install_resolver_dependencies: true | |
721 install_tool_dependencies: true | |
722 owner: iuc | |
723 tool_panel_section_label: "Mothur" | |
724 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
725 - name: mothur_sub_sample | |
726 install_resolver_dependencies: true | |
727 install_tool_dependencies: true | |
728 owner: iuc | |
729 tool_panel_section_label: "Mothur" | |
730 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
731 - name: mothur_summary_qual | |
732 install_resolver_dependencies: true | |
733 install_tool_dependencies: true | |
734 owner: iuc | |
735 tool_panel_section_label: "Mothur" | |
736 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
737 - name: mothur_summary_seqs | |
738 install_resolver_dependencies: true | |
739 install_tool_dependencies: true | |
740 owner: iuc | |
741 tool_panel_section_label: "Mothur" | |
742 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
743 - name: mothur_summary_shared | |
744 install_resolver_dependencies: true | |
745 install_tool_dependencies: true | |
746 owner: iuc | |
747 tool_panel_section_label: "Mothur" | |
748 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
749 - name: mothur_summary_single | |
750 install_resolver_dependencies: true | |
751 install_tool_dependencies: true | |
752 owner: iuc | |
753 tool_panel_section_label: "Mothur" | |
754 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
755 - name: mothur_summary_tax | |
756 install_resolver_dependencies: true | |
757 install_tool_dependencies: true | |
758 owner: iuc | |
759 tool_panel_section_label: "Mothur" | |
760 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
761 - name: mothur_tree_shared | |
762 install_resolver_dependencies: true | |
763 install_tool_dependencies: true | |
764 owner: iuc | |
765 tool_panel_section_label: "Mothur" | |
766 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
767 - name: mothur_trim_flows | |
768 install_resolver_dependencies: true | |
769 install_tool_dependencies: true | |
770 owner: iuc | |
771 tool_panel_section_label: "Mothur" | |
772 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
773 - name: mothur_trim_seqs | |
774 install_resolver_dependencies: true | |
775 install_tool_dependencies: true | |
776 owner: iuc | |
777 tool_panel_section_label: "Mothur" | |
778 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
779 - name: mothur_unifrac_unweighted | |
780 install_resolver_dependencies: true | |
781 install_tool_dependencies: true | |
782 owner: iuc | |
783 tool_panel_section_label: "Mothur" | |
784 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
785 - name: mothur_unifrac_weighted | |
786 install_resolver_dependencies: true | |
787 install_tool_dependencies: true | |
788 owner: iuc | |
789 tool_panel_section_label: "Mothur" | |
790 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
791 - name: mothur_unique_seqs | |
792 install_resolver_dependencies: true | |
793 install_tool_dependencies: true | |
794 owner: iuc | |
795 tool_panel_section_label: "Mothur" | |
796 tool_shed_url: https://toolshed.g2.bx.psu.edu | |
797 - name: mothur_venn | |
798 install_resolver_dependencies: true | |
799 install_tool_dependencies: true | |
800 owner: iuc | |
801 tool_panel_section_label: "Mothur" | |
802 tool_shed_url: https://toolshed.g2.bx.psu.edu |