comparison clearcut.xml @ 8:f7fabe2362b8 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"

7:7ad44d831a1f

**Command Documentation**

The clearcut_ command runs clearcut

The clearcut command allows mothur users to run the clearcut_program_ from within mothur. The clearcut program written by Initiative for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho. For more information about clearcut please refer to http://bioinformatics.hungry.com/clearcut/

Clearcut is a stand-alone reference implementation of relaxed neighbor joining (RNJ).

Clearcut is capable of taking either a distance matrix or a multiple sequence alignment (MSA) as input.  If necessary, Clearcut will compute corrected distances based on a configurable distance correction model (Jukes-Cantor or Kimura).  Clearcut outputs a phylogenetic tree in Newick format and an optional corrected distance matrix.

.. _clearcut_program: http://bioinformatics.hungry.com/clearcut/
.. _clearcut: https://www.mothur.org/wiki/Clearcut

v.1.20.0: Trivial upgrade to Mothur 1.33

    ]]></help>

8:f7fabe2362b8

**Command Documentation**

The clearcut_ command runs clearcut

The clearcut command allows mothur users to run the clearcut program from within mothur. The clearcut program written by Initiative for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho. 

Clearcut is a stand-alone reference implementation of relaxed neighbor joining (RNJ).

Clearcut is capable of taking either a distance matrix or a multiple sequence alignment (MSA) as input.  If necessary, Clearcut will compute corrected distances based on a configurable distance correction model (Jukes-Cantor or Kimura).  Clearcut outputs a phylogenetic tree in Newick format and an optional corrected distance matrix.

.. _clearcut: https://www.mothur.org/wiki/Clearcut

v.1.20.0: Trivial upgrade to Mothur 1.33

    ]]></help>