Mercurial > repos > iuc > mothur_collect_shared
diff test-data/biosample.xml @ 0:afac0d63dac6 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
| author | iuc |
|---|---|
| date | Fri, 19 May 2017 05:13:01 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/biosample.xml Fri May 19 05:13:01 2017 -0400 @@ -0,0 +1,33 @@ +<BioSampleAttributes> + <Attribute> + <Name>EDTA inhibitor tested</Name> + <HarmonizedName>edta_inhibitor_tested</HarmonizedName> + <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description> + <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format> + <Synonym>edta inhibitor tested</Synonym> + <Package use="mandatory">Beta-lactamase.1.0</Package> + </Attribute> + <Attribute> + <Name>FAO classification</Name> + <HarmonizedName>fao_class</HarmonizedName> + <Description>soil classification from the FAO World Reference Database for Soil Resources</Description> + <Format>{term}</Format> + <Synonym>fao class</Synonym> + <Synonym>fao classification</Synonym> + <Synonym>soil taxonomic/fao classification</Synonym> + <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package> + <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package> + <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package> + <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package> + <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package> + <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package> + </Attribute> + <Attribute> + <Name>HIV status</Name> + <HarmonizedName>hiv_stat</HarmonizedName> + <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description> + <Format>{boolean};{boolean}</Format> + <Synonym>hiv stat</Synonym> + <Synonym>hiv status</Synonym> + </Attribute> +</BioSampleAttributes>