comparison test-data/biosample.xml @ 0:7773b7afb53d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author iuc
date Fri, 19 May 2017 05:20:24 -0400
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-1:000000000000 0:7773b7afb53d
1 <BioSampleAttributes>
2 <Attribute>
3 <Name>EDTA inhibitor tested</Name>
4 <HarmonizedName>edta_inhibitor_tested</HarmonizedName>
5 <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description>
6 <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format>
7 <Synonym>edta inhibitor tested</Synonym>
8 <Package use="mandatory">Beta-lactamase.1.0</Package>
9 </Attribute>
10 <Attribute>
11 <Name>FAO classification</Name>
12 <HarmonizedName>fao_class</HarmonizedName>
13 <Description>soil classification from the FAO World Reference Database for Soil Resources</Description>
14 <Format>{term}</Format>
15 <Synonym>fao class</Synonym>
16 <Synonym>fao classification</Synonym>
17 <Synonym>soil taxonomic/fao classification</Synonym>
18 <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package>
19 <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package>
20 <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package>
21 <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package>
22 <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package>
23 <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package>
24 </Attribute>
25 <Attribute>
26 <Name>HIV status</Name>
27 <HarmonizedName>hiv_stat</HarmonizedName>
28 <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description>
29 <Format>{boolean};{boolean}</Format>
30 <Synonym>hiv stat</Synonym>
31 <Synonym>hiv status</Synonym>
32 </Attribute>
33 </BioSampleAttributes>