comparison tools.yaml @ 0:e86199dc2a7c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author iuc
date Fri, 19 May 2017 05:34:30 -0400
parents
children
comparison
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-1:000000000000 0:e86199dc2a7c
1 ---
2 # This is a sample file to be used as a reference for populating a list of
3 # tools that you wish to install into Galaxy from a Tool Shed via the
4 # `install_tool_shed_tools.py` script.
5 #
6 # For each tool you want to install, you must provide the following keys:
7 # * name: this is is the name of the tool to install
8 # * owner: owner of the Tool Shed repository from where the tools is being
9 # installed
10 # Further, you need to provide **one** of the following two keys:
11 # * tool_panel_section_id: ID of the tool panel section where you want the
12 # tool to be installed. The section ID can be found
13 # in Galaxy's `shed_tool_conf.xml` config file. Note
14 # that the specified section must exist in this file.
15 # Otherwise, the tool will be installed outside any
16 # section.
17 # * tool_panel_section_label: Display label of a tool panel section where
18 # you want the tool to be installed. If it does not
19 # exist, this section will be created on the target
20 # Galaxy instance (note that this is different than
21 # when using the ID).
22 # Multi-word labels need to be placed in quotes.
23 # Each label will have a corresponding ID created;
24 # the ID will be an all lowercase version of the
25 # label, with multiple words joined with
26 # underscores (e.g., 'BED tools' -> 'bed_tools').
27 #
28 # Tou can also specify the following optional keys to further define the
29 # installation properties:
30 # * tool_shed_url: the URL of the Tool Shed from where the tool should be
31 # installed. (default: https://toolshed.g2.bx.psu.edu)
32 # * revisions: a list of revisions of the tool, all of which will attempt to
33 # be installed. (default: latest)
34 # * install_tool_dependencies: True or False - whether to install tool
35 # dependencies or not. (default: True)
36 # * install_repository_dependencies: True or False - whether to install repo
37 # dependencies or not. (default: True)
38
39
40 # pip install ephemeris -U
41 # shed_install -t tools.yaml -a <galaxy admin API key> -g <galaxy instance>
42 # (the latter two can also be configure inside the yaml with following two lines)
43 #api_key: admin
44 #galaxy_instance: http://localhost:8080/
45
46 tools:
47 - name: mothur_align_check
48 install_resolver_dependencies: true
49 install_tool_dependencies: true
50 owner: iuc
51 tool_panel_section_label: "Mothur"
52 tool_shed_url: https://toolshed.g2.bx.psu.edu
53 - name: mothur_align_seqs
54 install_resolver_dependencies: true
55 install_tool_dependencies: true
56 owner: iuc
57 tool_panel_section_label: "Mothur"
58 tool_shed_url: https://toolshed.g2.bx.psu.edu
59 - name: mothur_amova
60 install_resolver_dependencies: true
61 install_tool_dependencies: true
62 owner: iuc
63 tool_panel_section_label: "Mothur"
64 tool_shed_url: https://toolshed.g2.bx.psu.edu
65 - name: mothur_anosim
66 install_resolver_dependencies: true
67 install_tool_dependencies: true
68 owner: iuc
69 tool_panel_section_label: "Mothur"
70 tool_shed_url: https://toolshed.g2.bx.psu.edu
71 - name: mothur_bin_seqs
72 install_resolver_dependencies: true
73 install_tool_dependencies: true
74 owner: iuc
75 tool_panel_section_label: "Mothur"
76 tool_shed_url: https://toolshed.g2.bx.psu.edu
77 - name: mothur_chimera_bellerophon
78 install_resolver_dependencies: true
79 install_tool_dependencies: true
80 owner: iuc
81 tool_panel_section_label: "Mothur"
82 tool_shed_url: https://toolshed.g2.bx.psu.edu
83 - name: mothur_chimera_ccode
84 install_resolver_dependencies: true
85 install_tool_dependencies: true
86 owner: iuc
87 tool_panel_section_label: "Mothur"
88 tool_shed_url: https://toolshed.g2.bx.psu.edu
89 - name: mothur_chimera_check
90 install_resolver_dependencies: true
91 install_tool_dependencies: true
92 owner: iuc
93 tool_panel_section_label: "Mothur"
94 tool_shed_url: https://toolshed.g2.bx.psu.edu
95 - name: mothur_chimera_perseus
96 install_resolver_dependencies: true
97 install_tool_dependencies: true
98 owner: iuc
99 tool_panel_section_label: "Mothur"
100 tool_shed_url: https://toolshed.g2.bx.psu.edu
101 - name: mothur_chimera_pintail
102 install_resolver_dependencies: true
103 install_tool_dependencies: true
104 owner: iuc
105 tool_panel_section_label: "Mothur"
106 tool_shed_url: https://toolshed.g2.bx.psu.edu
107 - name: mothur_chimera_slayer
108 install_resolver_dependencies: true
109 install_tool_dependencies: true
110 owner: iuc
111 tool_panel_section_label: "Mothur"
112 tool_shed_url: https://toolshed.g2.bx.psu.edu
113 - name: mothur_chimera_uchime
114 install_resolver_dependencies: true
115 install_tool_dependencies: true
116 owner: iuc
117 tool_panel_section_label: "Mothur"
118 tool_shed_url: https://toolshed.g2.bx.psu.edu
119 - name: mothur_chop_seqs
120 install_resolver_dependencies: true
121 install_tool_dependencies: true
122 owner: iuc
123 tool_panel_section_label: "Mothur"
124 tool_shed_url: https://toolshed.g2.bx.psu.edu
125 - name: mothur_classify_otu
126 install_resolver_dependencies: true
127 install_tool_dependencies: true
128 owner: iuc
129 tool_panel_section_label: "Mothur"
130 tool_shed_url: https://toolshed.g2.bx.psu.edu
131 - name: mothur_classify_rf
132 install_resolver_dependencies: true
133 install_tool_dependencies: true
134 owner: iuc
135 tool_panel_section_label: "Mothur"
136 tool_shed_url: https://toolshed.g2.bx.psu.edu
137 - name: mothur_classify_seqs
138 install_resolver_dependencies: true
139 install_tool_dependencies: true
140 owner: iuc
141 tool_panel_section_label: "Mothur"
142 tool_shed_url: https://toolshed.g2.bx.psu.edu
143 - name: mothur_classify_tree
144 install_resolver_dependencies: true
145 install_tool_dependencies: true
146 owner: iuc
147 tool_panel_section_label: "Mothur"
148 tool_shed_url: https://toolshed.g2.bx.psu.edu
149 - name: mothur_clearcut
150 install_resolver_dependencies: true
151 install_tool_dependencies: true
152 owner: iuc
153 tool_panel_section_label: "Mothur"
154 tool_shed_url: https://toolshed.g2.bx.psu.edu
155 - name: mothur_cluster_classic
156 install_resolver_dependencies: true
157 install_tool_dependencies: true
158 owner: iuc
159 tool_panel_section_label: "Mothur"
160 tool_shed_url: https://toolshed.g2.bx.psu.edu
161 - name: mothur_cluster_fragments
162 install_resolver_dependencies: true
163 install_tool_dependencies: true
164 owner: iuc
165 tool_panel_section_label: "Mothur"
166 tool_shed_url: https://toolshed.g2.bx.psu.edu
167 - name: mothur_cluster_split
168 install_resolver_dependencies: true
169 install_tool_dependencies: true
170 owner: iuc
171 tool_panel_section_label: "Mothur"
172 tool_shed_url: https://toolshed.g2.bx.psu.edu
173 - name: mothur_cluster
174 install_resolver_dependencies: true
175 install_tool_dependencies: true
176 owner: iuc
177 tool_panel_section_label: "Mothur"
178 tool_shed_url: https://toolshed.g2.bx.psu.edu
179 - name: mothur_collect_shared
180 install_resolver_dependencies: true
181 install_tool_dependencies: true
182 owner: iuc
183 tool_panel_section_label: "Mothur"
184 tool_shed_url: https://toolshed.g2.bx.psu.edu
185 - name: mothur_collect_single
186 install_resolver_dependencies: true
187 install_tool_dependencies: true
188 owner: iuc
189 tool_panel_section_label: "Mothur"
190 tool_shed_url: https://toolshed.g2.bx.psu.edu
191 - name: mothur_consensus_seqs
192 install_resolver_dependencies: true
193 install_tool_dependencies: true
194 owner: iuc
195 tool_panel_section_label: "Mothur"
196 tool_shed_url: https://toolshed.g2.bx.psu.edu
197 - name: mothur_cooccurrence
198 install_resolver_dependencies: true
199 install_tool_dependencies: true
200 owner: iuc
201 tool_panel_section_label: "Mothur"
202 tool_shed_url: https://toolshed.g2.bx.psu.edu
203 - name: mothur_corr_axes
204 install_resolver_dependencies: true
205 install_tool_dependencies: true
206 owner: iuc
207 tool_panel_section_label: "Mothur"
208 tool_shed_url: https://toolshed.g2.bx.psu.edu
209 - name: mothur_count_groups
210 install_resolver_dependencies: true
211 install_tool_dependencies: true
212 owner: iuc
213 tool_panel_section_label: "Mothur"
214 tool_shed_url: https://toolshed.g2.bx.psu.edu
215 - name: mothur_count_seqs
216 install_resolver_dependencies: true
217 install_tool_dependencies: true
218 owner: iuc
219 tool_panel_section_label: "Mothur"
220 tool_shed_url: https://toolshed.g2.bx.psu.edu
221 - name: mothur_create_database
222 install_resolver_dependencies: true
223 install_tool_dependencies: true
224 owner: iuc
225 tool_panel_section_label: "Mothur"
226 tool_shed_url: https://toolshed.g2.bx.psu.edu
227 - name: mothur_degap_seqs
228 install_resolver_dependencies: true
229 install_tool_dependencies: true
230 owner: iuc
231 tool_panel_section_label: "Mothur"
232 tool_shed_url: https://toolshed.g2.bx.psu.edu
233 - name: mothur_deunique_seqs
234 install_resolver_dependencies: true
235 install_tool_dependencies: true
236 owner: iuc
237 tool_panel_section_label: "Mothur"
238 tool_shed_url: https://toolshed.g2.bx.psu.edu
239 - name: mothur_deunique_tree
240 install_resolver_dependencies: true
241 install_tool_dependencies: true
242 owner: iuc
243 tool_panel_section_label: "Mothur"
244 tool_shed_url: https://toolshed.g2.bx.psu.edu
245 - name: mothur_dist_seqs
246 install_resolver_dependencies: true
247 install_tool_dependencies: true
248 owner: iuc
249 tool_panel_section_label: "Mothur"
250 tool_shed_url: https://toolshed.g2.bx.psu.edu
251 - name: mothur_dist_shared
252 install_resolver_dependencies: true
253 install_tool_dependencies: true
254 owner: iuc
255 tool_panel_section_label: "Mothur"
256 tool_shed_url: https://toolshed.g2.bx.psu.edu
257 - name: mothur_fastq_info
258 install_resolver_dependencies: true
259 install_tool_dependencies: true
260 owner: iuc
261 tool_panel_section_label: "Mothur"
262 tool_shed_url: https://toolshed.g2.bx.psu.edu
263 - name: mothur_filter_seqs
264 install_resolver_dependencies: true
265 install_tool_dependencies: true
266 owner: iuc
267 tool_panel_section_label: "Mothur"
268 tool_shed_url: https://toolshed.g2.bx.psu.edu
269 - name: mothur_filter_shared
270 install_resolver_dependencies: true
271 install_tool_dependencies: true
272 owner: iuc
273 tool_panel_section_label: "Mothur"
274 tool_shed_url: https://toolshed.g2.bx.psu.edu
275 - name: mothur_get_communitytype
276 install_resolver_dependencies: true
277 install_tool_dependencies: true
278 owner: iuc
279 tool_panel_section_label: "Mothur"
280 tool_shed_url: https://toolshed.g2.bx.psu.edu
281 - name: mothur_get_coremicrobiome
282 install_resolver_dependencies: true
283 install_tool_dependencies: true
284 owner: iuc
285 tool_panel_section_label: "Mothur"
286 tool_shed_url: https://toolshed.g2.bx.psu.edu
287 - name: mothur_get_dists
288 install_resolver_dependencies: true
289 install_tool_dependencies: true
290 owner: iuc
291 tool_panel_section_label: "Mothur"
292 tool_shed_url: https://toolshed.g2.bx.psu.edu
293 - name: mothur_get_groups
294 install_resolver_dependencies: true
295 install_tool_dependencies: true
296 owner: iuc
297 tool_panel_section_label: "Mothur"
298 tool_shed_url: https://toolshed.g2.bx.psu.edu
299 - name: mothur_get_group
300 install_resolver_dependencies: true
301 install_tool_dependencies: true
302 owner: iuc
303 tool_panel_section_label: "Mothur"
304 tool_shed_url: https://toolshed.g2.bx.psu.edu
305 - name: mothur_get_label
306 install_resolver_dependencies: true
307 install_tool_dependencies: true
308 owner: iuc
309 tool_panel_section_label: "Mothur"
310 tool_shed_url: https://toolshed.g2.bx.psu.edu
311 - name: mothur_get_lineage
312 install_resolver_dependencies: true
313 install_tool_dependencies: true
314 owner: iuc
315 tool_panel_section_label: "Mothur"
316 tool_shed_url: https://toolshed.g2.bx.psu.edu
317 - name: mothur_get_mimarkspackage
318 install_resolver_dependencies: true
319 install_tool_dependencies: true
320 owner: iuc
321 tool_panel_section_label: "Mothur"
322 tool_shed_url: https://toolshed.g2.bx.psu.edu
323 - name: mothur_get_otulabels
324 install_resolver_dependencies: true
325 install_tool_dependencies: true
326 owner: iuc
327 tool_panel_section_label: "Mothur"
328 tool_shed_url: https://toolshed.g2.bx.psu.edu
329 - name: mothur_get_otulist
330 install_resolver_dependencies: true
331 install_tool_dependencies: true
332 owner: iuc
333 tool_panel_section_label: "Mothur"
334 tool_shed_url: https://toolshed.g2.bx.psu.edu
335 - name: mothur_get_oturep
336 install_resolver_dependencies: true
337 install_tool_dependencies: true
338 owner: iuc
339 tool_panel_section_label: "Mothur"
340 tool_shed_url: https://toolshed.g2.bx.psu.edu
341 - name: mothur_get_otus
342 install_resolver_dependencies: true
343 install_tool_dependencies: true
344 owner: iuc
345 tool_panel_section_label: "Mothur"
346 tool_shed_url: https://toolshed.g2.bx.psu.edu
347 - name: mothur_get_rabund
348 install_resolver_dependencies: true
349 install_tool_dependencies: true
350 owner: iuc
351 tool_panel_section_label: "Mothur"
352 tool_shed_url: https://toolshed.g2.bx.psu.edu
353 - name: mothur_get_relabund
354 install_resolver_dependencies: true
355 install_tool_dependencies: true
356 owner: iuc
357 tool_panel_section_label: "Mothur"
358 tool_shed_url: https://toolshed.g2.bx.psu.edu
359 - name: mothur_get_sabund
360 install_resolver_dependencies: true
361 install_tool_dependencies: true
362 owner: iuc
363 tool_panel_section_label: "Mothur"
364 tool_shed_url: https://toolshed.g2.bx.psu.edu
365 - name: mothur_get_seqs
366 install_resolver_dependencies: true
367 install_tool_dependencies: true
368 owner: iuc
369 tool_panel_section_label: "Mothur"
370 tool_shed_url: https://toolshed.g2.bx.psu.edu
371 - name: mothur_get_sharedseqs
372 install_resolver_dependencies: true
373 install_tool_dependencies: true
374 owner: iuc
375 tool_panel_section_label: "Mothur"
376 tool_shed_url: https://toolshed.g2.bx.psu.edu
377 - name: mothur_hcluster
378 install_resolver_dependencies: true
379 install_tool_dependencies: true
380 owner: iuc
381 tool_panel_section_label: "Mothur"
382 tool_shed_url: https://toolshed.g2.bx.psu.edu
383 - name: mothur_heatmap_bin
384 install_resolver_dependencies: true
385 install_tool_dependencies: true
386 owner: iuc
387 tool_panel_section_label: "Mothur"
388 tool_shed_url: https://toolshed.g2.bx.psu.edu
389 - name: mothur_heatmap_sim
390 install_resolver_dependencies: true
391 install_tool_dependencies: true
392 owner: iuc
393 tool_panel_section_label: "Mothur"
394 tool_shed_url: https://toolshed.g2.bx.psu.edu
395 - name: mothur_homova
396 install_resolver_dependencies: true
397 install_tool_dependencies: true
398 owner: iuc
399 tool_panel_section_label: "Mothur"
400 tool_shed_url: https://toolshed.g2.bx.psu.edu
401 - name: mothur_indicator
402 install_resolver_dependencies: true
403 install_tool_dependencies: true
404 owner: iuc
405 tool_panel_section_label: "Mothur"
406 tool_shed_url: https://toolshed.g2.bx.psu.edu
407 - name: mothur_lefse
408 install_resolver_dependencies: true
409 install_tool_dependencies: true
410 owner: iuc
411 tool_panel_section_label: "Mothur"
412 tool_shed_url: https://toolshed.g2.bx.psu.edu
413 - name: mothur_libshuff
414 install_resolver_dependencies: true
415 install_tool_dependencies: true
416 owner: iuc
417 tool_panel_section_label: "Mothur"
418 tool_shed_url: https://toolshed.g2.bx.psu.edu
419 - name: mothur_list_otulabels
420 install_resolver_dependencies: true
421 install_tool_dependencies: true
422 owner: iuc
423 tool_panel_section_label: "Mothur"
424 tool_shed_url: https://toolshed.g2.bx.psu.edu
425 - name: mothur_list_seqs
426 install_resolver_dependencies: true
427 install_tool_dependencies: true
428 owner: iuc
429 tool_panel_section_label: "Mothur"
430 tool_shed_url: https://toolshed.g2.bx.psu.edu
431 - name: mothur_make_biom
432 install_resolver_dependencies: true
433 install_tool_dependencies: true
434 owner: iuc
435 tool_panel_section_label: "Mothur"
436 tool_shed_url: https://toolshed.g2.bx.psu.edu
437 - name: mothur_make_contigs
438 install_resolver_dependencies: true
439 install_tool_dependencies: true
440 owner: iuc
441 tool_panel_section_label: "Mothur"
442 tool_shed_url: https://toolshed.g2.bx.psu.edu
443 - name: mothur_make_design
444 install_resolver_dependencies: true
445 install_tool_dependencies: true
446 owner: iuc
447 tool_panel_section_label: "Mothur"
448 tool_shed_url: https://toolshed.g2.bx.psu.edu
449 - name: mothur_make_fastq
450 install_resolver_dependencies: true
451 install_tool_dependencies: true
452 owner: iuc
453 tool_panel_section_label: "Mothur"
454 tool_shed_url: https://toolshed.g2.bx.psu.edu
455 - name: mothur_make_group
456 install_resolver_dependencies: true
457 install_tool_dependencies: true
458 owner: iuc
459 tool_panel_section_label: "Mothur"
460 tool_shed_url: https://toolshed.g2.bx.psu.edu
461 - name: mothur_make_lefse
462 install_resolver_dependencies: true
463 install_tool_dependencies: true
464 owner: iuc
465 tool_panel_section_label: "Mothur"
466 tool_shed_url: https://toolshed.g2.bx.psu.edu
467 - name: mothur_make_lookup
468 install_resolver_dependencies: true
469 install_tool_dependencies: true
470 owner: iuc
471 tool_panel_section_label: "Mothur"
472 tool_shed_url: https://toolshed.g2.bx.psu.edu
473 - name: mothur_make_shared
474 install_resolver_dependencies: true
475 install_tool_dependencies: true
476 owner: iuc
477 tool_panel_section_label: "Mothur"
478 tool_shed_url: https://toolshed.g2.bx.psu.edu
479 - name: mothur_make_sra
480 install_resolver_dependencies: true
481 install_tool_dependencies: true
482 owner: iuc
483 tool_panel_section_label: "Mothur"
484 tool_shed_url: https://toolshed.g2.bx.psu.edu
485 - name: mothur_mantel
486 install_resolver_dependencies: true
487 install_tool_dependencies: true
488 owner: iuc
489 tool_panel_section_label: "Mothur"
490 tool_shed_url: https://toolshed.g2.bx.psu.edu
491 - name: mothur_merge_files
492 install_resolver_dependencies: true
493 install_tool_dependencies: true
494 owner: iuc
495 tool_panel_section_label: "Mothur"
496 tool_shed_url: https://toolshed.g2.bx.psu.edu
497 - name: mothur_merge_groups
498 install_resolver_dependencies: true
499 install_tool_dependencies: true
500 owner: iuc
501 tool_panel_section_label: "Mothur"
502 tool_shed_url: https://toolshed.g2.bx.psu.edu
503 - name: mothur_merge_sfffiles
504 install_resolver_dependencies: true
505 install_tool_dependencies: true
506 owner: iuc
507 tool_panel_section_label: "Mothur"
508 tool_shed_url: https://toolshed.g2.bx.psu.edu
509 - name: mothur_merge_taxsummary
510 install_resolver_dependencies: true
511 install_tool_dependencies: true
512 owner: iuc
513 tool_panel_section_label: "Mothur"
514 tool_shed_url: https://toolshed.g2.bx.psu.edu
515 - name: mothur_metastats
516 install_resolver_dependencies: true
517 install_tool_dependencies: true
518 owner: iuc
519 tool_panel_section_label: "Mothur"
520 tool_shed_url: https://toolshed.g2.bx.psu.edu
521 - name: mothur_mimarks_attributes
522 install_resolver_dependencies: true
523 install_tool_dependencies: true
524 owner: iuc
525 tool_panel_section_label: "Mothur"
526 tool_shed_url: https://toolshed.g2.bx.psu.edu
527 - name: mothur_nmds
528 install_resolver_dependencies: true
529 install_tool_dependencies: true
530 owner: iuc
531 tool_panel_section_label: "Mothur"
532 tool_shed_url: https://toolshed.g2.bx.psu.edu
533 - name: mothur_normalize_shared
534 install_resolver_dependencies: true
535 install_tool_dependencies: true
536 owner: iuc
537 tool_panel_section_label: "Mothur"
538 tool_shed_url: https://toolshed.g2.bx.psu.edu
539 - name: mothur_otu_association
540 install_resolver_dependencies: true
541 install_tool_dependencies: true
542 owner: iuc
543 tool_panel_section_label: "Mothur"
544 tool_shed_url: https://toolshed.g2.bx.psu.edu
545 - name: mothur_otu_hierarchy
546 install_resolver_dependencies: true
547 install_tool_dependencies: true
548 owner: iuc
549 tool_panel_section_label: "Mothur"
550 tool_shed_url: https://toolshed.g2.bx.psu.edu
551 - name: mothur_pairwise_seqs
552 install_resolver_dependencies: true
553 install_tool_dependencies: true
554 owner: iuc
555 tool_panel_section_label: "Mothur"
556 tool_shed_url: https://toolshed.g2.bx.psu.edu
557 - name: mothur_parse_list
558 install_resolver_dependencies: true
559 install_tool_dependencies: true
560 owner: iuc
561 tool_panel_section_label: "Mothur"
562 tool_shed_url: https://toolshed.g2.bx.psu.edu
563 - name: mothur_parsimony
564 install_resolver_dependencies: true
565 install_tool_dependencies: true
566 owner: iuc
567 tool_panel_section_label: "Mothur"
568 tool_shed_url: https://toolshed.g2.bx.psu.edu
569 - name: mothur_pca
570 install_resolver_dependencies: true
571 install_tool_dependencies: true
572 owner: iuc
573 tool_panel_section_label: "Mothur"
574 tool_shed_url: https://toolshed.g2.bx.psu.edu
575 - name: mothur_pcoa
576 install_resolver_dependencies: true
577 install_tool_dependencies: true
578 owner: iuc
579 tool_panel_section_label: "Mothur"
580 tool_shed_url: https://toolshed.g2.bx.psu.edu
581 - name: mothur_pcr_seqs
582 install_resolver_dependencies: true
583 install_tool_dependencies: true
584 owner: iuc
585 tool_panel_section_label: "Mothur"
586 tool_shed_url: https://toolshed.g2.bx.psu.edu
587 - name: mothur_phylo_diversity
588 install_resolver_dependencies: true
589 install_tool_dependencies: true
590 owner: iuc
591 tool_panel_section_label: "Mothur"
592 tool_shed_url: https://toolshed.g2.bx.psu.edu
593 - name: mothur_phylotype
594 install_resolver_dependencies: true
595 install_tool_dependencies: true
596 owner: iuc
597 tool_panel_section_label: "Mothur"
598 tool_shed_url: https://toolshed.g2.bx.psu.edu
599 - name: mothur_pre_cluster
600 install_resolver_dependencies: true
601 install_tool_dependencies: true
602 owner: iuc
603 tool_panel_section_label: "Mothur"
604 tool_shed_url: https://toolshed.g2.bx.psu.edu
605 - name: mothur_primer_design
606 install_resolver_dependencies: true
607 install_tool_dependencies: true
608 owner: iuc
609 tool_panel_section_label: "Mothur"
610 tool_shed_url: https://toolshed.g2.bx.psu.edu
611 - name: mothur_rarefaction_shared
612 install_resolver_dependencies: true
613 install_tool_dependencies: true
614 owner: iuc
615 tool_panel_section_label: "Mothur"
616 tool_shed_url: https://toolshed.g2.bx.psu.edu
617 - name: mothur_rarefaction_single
618 install_resolver_dependencies: true
619 install_tool_dependencies: true
620 owner: iuc
621 tool_panel_section_label: "Mothur"
622 tool_shed_url: https://toolshed.g2.bx.psu.edu
623 - name: mothur_remove_dists
624 install_resolver_dependencies: true
625 install_tool_dependencies: true
626 owner: iuc
627 tool_panel_section_label: "Mothur"
628 tool_shed_url: https://toolshed.g2.bx.psu.edu
629 - name: mothur_remove_groups
630 install_resolver_dependencies: true
631 install_tool_dependencies: true
632 owner: iuc
633 tool_panel_section_label: "Mothur"
634 tool_shed_url: https://toolshed.g2.bx.psu.edu
635 - name: mothur_remove_lineage
636 install_resolver_dependencies: true
637 install_tool_dependencies: true
638 owner: iuc
639 tool_panel_section_label: "Mothur"
640 tool_shed_url: https://toolshed.g2.bx.psu.edu
641 - name: mothur_remove_otulabels
642 install_resolver_dependencies: true
643 install_tool_dependencies: true
644 owner: iuc
645 tool_panel_section_label: "Mothur"
646 tool_shed_url: https://toolshed.g2.bx.psu.edu
647 - name: mothur_remove_otus
648 install_resolver_dependencies: true
649 install_tool_dependencies: true
650 owner: iuc
651 tool_panel_section_label: "Mothur"
652 tool_shed_url: https://toolshed.g2.bx.psu.edu
653 - name: mothur_remove_rare
654 install_resolver_dependencies: true
655 install_tool_dependencies: true
656 owner: iuc
657 tool_panel_section_label: "Mothur"
658 tool_shed_url: https://toolshed.g2.bx.psu.edu
659 - name: mothur_remove_seqs
660 install_resolver_dependencies: true
661 install_tool_dependencies: true
662 owner: iuc
663 tool_panel_section_label: "Mothur"
664 tool_shed_url: https://toolshed.g2.bx.psu.edu
665 - name: mothur_reverse_seqs
666 install_resolver_dependencies: true
667 install_tool_dependencies: true
668 owner: iuc
669 tool_panel_section_label: "Mothur"
670 tool_shed_url: https://toolshed.g2.bx.psu.edu
671 - name: mothur_screen_seqs
672 install_resolver_dependencies: true
673 install_tool_dependencies: true
674 owner: iuc
675 tool_panel_section_label: "Mothur"
676 tool_shed_url: https://toolshed.g2.bx.psu.edu
677 - name: mothur_sens_spec
678 install_resolver_dependencies: true
679 install_tool_dependencies: true
680 owner: iuc
681 tool_panel_section_label: "Mothur"
682 tool_shed_url: https://toolshed.g2.bx.psu.edu
683 - name: mothur_seq_error
684 install_resolver_dependencies: true
685 install_tool_dependencies: true
686 owner: iuc
687 tool_panel_section_label: "Mothur"
688 tool_shed_url: https://toolshed.g2.bx.psu.edu
689 - name: mothur_sffinfo
690 install_resolver_dependencies: true
691 install_tool_dependencies: true
692 owner: iuc
693 tool_panel_section_label: "Mothur"
694 tool_shed_url: https://toolshed.g2.bx.psu.edu
695 - name: mothur_shhh_flows
696 install_resolver_dependencies: true
697 install_tool_dependencies: true
698 owner: iuc
699 tool_panel_section_label: "Mothur"
700 tool_shed_url: https://toolshed.g2.bx.psu.edu
701 - name: mothur_shhh_seqs
702 install_resolver_dependencies: true
703 install_tool_dependencies: true
704 owner: iuc
705 tool_panel_section_label: "Mothur"
706 tool_shed_url: https://toolshed.g2.bx.psu.edu
707 - name: mothur_sort_seqs
708 install_resolver_dependencies: true
709 install_tool_dependencies: true
710 owner: iuc
711 tool_panel_section_label: "Mothur"
712 tool_shed_url: https://toolshed.g2.bx.psu.edu
713 - name: mothur_split_abund
714 install_resolver_dependencies: true
715 install_tool_dependencies: true
716 owner: iuc
717 tool_panel_section_label: "Mothur"
718 tool_shed_url: https://toolshed.g2.bx.psu.edu
719 - name: mothur_split_groups
720 install_resolver_dependencies: true
721 install_tool_dependencies: true
722 owner: iuc
723 tool_panel_section_label: "Mothur"
724 tool_shed_url: https://toolshed.g2.bx.psu.edu
725 - name: mothur_sub_sample
726 install_resolver_dependencies: true
727 install_tool_dependencies: true
728 owner: iuc
729 tool_panel_section_label: "Mothur"
730 tool_shed_url: https://toolshed.g2.bx.psu.edu
731 - name: mothur_summary_qual
732 install_resolver_dependencies: true
733 install_tool_dependencies: true
734 owner: iuc
735 tool_panel_section_label: "Mothur"
736 tool_shed_url: https://toolshed.g2.bx.psu.edu
737 - name: mothur_summary_seqs
738 install_resolver_dependencies: true
739 install_tool_dependencies: true
740 owner: iuc
741 tool_panel_section_label: "Mothur"
742 tool_shed_url: https://toolshed.g2.bx.psu.edu
743 - name: mothur_summary_shared
744 install_resolver_dependencies: true
745 install_tool_dependencies: true
746 owner: iuc
747 tool_panel_section_label: "Mothur"
748 tool_shed_url: https://toolshed.g2.bx.psu.edu
749 - name: mothur_summary_single
750 install_resolver_dependencies: true
751 install_tool_dependencies: true
752 owner: iuc
753 tool_panel_section_label: "Mothur"
754 tool_shed_url: https://toolshed.g2.bx.psu.edu
755 - name: mothur_summary_tax
756 install_resolver_dependencies: true
757 install_tool_dependencies: true
758 owner: iuc
759 tool_panel_section_label: "Mothur"
760 tool_shed_url: https://toolshed.g2.bx.psu.edu
761 - name: mothur_tree_shared
762 install_resolver_dependencies: true
763 install_tool_dependencies: true
764 owner: iuc
765 tool_panel_section_label: "Mothur"
766 tool_shed_url: https://toolshed.g2.bx.psu.edu
767 - name: mothur_trim_flows
768 install_resolver_dependencies: true
769 install_tool_dependencies: true
770 owner: iuc
771 tool_panel_section_label: "Mothur"
772 tool_shed_url: https://toolshed.g2.bx.psu.edu
773 - name: mothur_trim_seqs
774 install_resolver_dependencies: true
775 install_tool_dependencies: true
776 owner: iuc
777 tool_panel_section_label: "Mothur"
778 tool_shed_url: https://toolshed.g2.bx.psu.edu
779 - name: mothur_unifrac_unweighted
780 install_resolver_dependencies: true
781 install_tool_dependencies: true
782 owner: iuc
783 tool_panel_section_label: "Mothur"
784 tool_shed_url: https://toolshed.g2.bx.psu.edu
785 - name: mothur_unifrac_weighted
786 install_resolver_dependencies: true
787 install_tool_dependencies: true
788 owner: iuc
789 tool_panel_section_label: "Mothur"
790 tool_shed_url: https://toolshed.g2.bx.psu.edu
791 - name: mothur_unique_seqs
792 install_resolver_dependencies: true
793 install_tool_dependencies: true
794 owner: iuc
795 tool_panel_section_label: "Mothur"
796 tool_shed_url: https://toolshed.g2.bx.psu.edu
797 - name: mothur_venn
798 install_resolver_dependencies: true
799 install_tool_dependencies: true
800 owner: iuc
801 tool_panel_section_label: "Mothur"
802 tool_shed_url: https://toolshed.g2.bx.psu.edu