Mercurial > repos > iuc > mothur_get_otulist

directory /test-data/ @ 2:7a922d81eca2 draft

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file 98_sq_phylip_amazon.dist 87126 -rw-r--r--
file Fasting_Example1.fasta 2933 -rw-r--r--
file Fasting_Example1.qual 8321 -rw-r--r--
file Fasting_Example1.scrap.sff 16872 -rw-r--r--
file Fasting_Example1.sff 16872 -rw-r--r--
file Fasting_Example2.sff 16688 -rw-r--r--
file GQY1XT001.oligos 322 -rw-r--r--
file HMP_MOCK.v35.align 1600514 -rw-r--r--
file HMP_MOCK.v35.align.names 900 -rw-r--r--
file HMP_MOCK.v35.fasta 17599 -rw-r--r--
file HMP_MOCK.v35.pintail.quan 2383 -rw-r--r--
file HMP_MOCK.v35.slayer.chimeras 668 -rw-r--r--
file HMPv5-v3_1368-1369.oligos 77 -rw-r--r--
file LookUp_Titanium.pat 140358 -rw-r--r--
file M00967_43_000000000-A3JHG_1_1101_14010_4122.chimeracheck.svg 996 -rw-r--r--
file Mock_S280_L001_R1_001_small.contigs.report 1618 -rw-r--r--
file Mock_S280_L001_R1_001_small.fastq 14009 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.bad.accnos 150 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.fasta 7490 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups 1084 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.align.report 2813 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.align_head 500457 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.align_head.names 877 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.align_head_withchimera 150137 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.bellerophon.accnos 524 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.ccode.accnos 43 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.chimeracheck.chimeras 1527 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.chop.fasta 27858 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.denovo.uchime.chimeras 858 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.error.summary 638 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.fasta 6591 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.names 830 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.names_tiny 221 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.ng.fasta 2987 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.pintail.accnos 176 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.rc.align_head 2987 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.accnos 44 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.alns 2131 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.chimeras 358 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.slayer.chimeras 589 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.good.unique.align_head 450411 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.qual 20001 -rw-r--r--
file Mock_S280_L001_R1_001_small.trim.contigs.summary 1540 -rw-r--r--
file Mock_S280_L001_R2_001_small.fastq 14001 -rw-r--r--
file abrecovery.fasta 122491 -rwxr-xr-x
file abrecovery.groups 2903 -rw-r--r--
file abrecovery.names 4356 -rw-r--r--
file abrecovery.pds.wang.taxonomy 30220 -rw-r--r--
file abrecovery.pds.wang.tree.sum 6059 -rw-r--r--
file abrecovery.tre 7441 -rw-r--r--
file amazon.accnos.otulabels 21 -rw-r--r--
file amazon.align_head 150027 -rw-r--r--
file amazon.align_head.count_table 57 -rw-r--r--
file amazon.align_head.list 115 -rw-r--r--
file amazon.align_head.names 45 -rw-r--r--
file amazon.align_head.wang.taxonomy 397 -rw-r--r--
file amazon.align_head_short 57 -rw-r--r--
file amazon.an.0.03.-.0.05.otu.hierarchy 1450 -rw-r--r--
file amazon.an.0.03.pearson.otu.corr 116417 -rw-r--r--
file amazon.an.jclass.unique.tre 28 -rw-r--r--
file amazon.an.list 25580 -rw-r--r--
file amazon.an.rabund 3011 -rw-r--r--
file amazon.an.rabund2 348 -rw-r--r--
file amazon.an.relabund 25802 -rw-r--r--
file amazon.an.sabund 2673 -rw-r--r--
file amazon.an.sabund2 2673 -rw-r--r--
file amazon.an.sabund3 33 -rw-r--r--
file amazon.an.shared 7107 -rw-r--r--
file amazon.bad.accnos 55 -rw-r--r--
file amazon.count_table 894 -rw-r--r--
file amazon.design 882 -rw-r--r--
file amazon.dist 78896 -rw-r--r--
file amazon.fasta 67349 -rw-r--r--
file amazon.fasta_head 3910 -rw-r--r--
file amazon.fragclust.fasta 66311 -rw-r--r--
file amazon.fragclust.names 1358 -rw-r--r--
file amazon.groupaccnos 15 -rw-r--r--
file amazon.groups 1420 -rw-r--r--
file amazon.head.names 70 -rw-r--r--
file amazon.metadata 35 -rw-r--r--
file amazon.mothur.shared 151 -rw-r--r--
file amazon.names 1358 -rw-r--r--
file amazon.otus.accnos 18 -rw-r--r--
file amazon.pair.dist 63 -rw-r--r--
file amazon.pcoa.axes 92646 -rw-r--r--
file amazon.pcoa.loadings 1180 -rw-r--r--
file amazon.silva.wang.tax.summary 788 -rw-r--r--
file amazon.square.pcoa.axes 96 -rw-r--r--
file amazon.unique.fasta 66311 -rw-r--r--
file amazon.unique.names 1358 -rw-r--r--
file amazon.wang.knn.tax.summary 226 -rw-r--r--
file amazon.wang.wang.taxonomy 12320 -rw-r--r--
file amazon1.count_table 912 -rw-r--r--
file amazon1.names 1372 -rw-r--r--
file amazon_withgroups.count_table 1293 -rw-r--r--
file amazon_withgroups.redundant.groups 1617 -rw-r--r--
file amazon_withgroups_pasture.count_table 566 -rw-r--r--
file biosample.source 1353 -rw-r--r--
file biosample.tsv 7049 -rw-r--r--
file biosample.xml 1729 -rw-r--r--
file cd-test.constaxonomy 668 -rw-r--r--
file cd-test.count_table 115 -rw-r--r--
file cd-test.database 3008 -rw-r--r--
file cd-test.list 183 -rw-r--r--
file cd-test.repfasta 2360 -rw-r--r--
file cd-test.repname 195 -rw-r--r--
file env.dist 9552 -rw-r--r--
file esophagus.fn.shared 5066 -rw-r--r--
file example.biom 3106 -rw-r--r--
file example.constaxonomy 961 -rw-r--r--
file final.tx.1.cons.taxonomy 7417 -rw-r--r--
file final.tx.1.subsample.1.pick.shared 1401 -rw-r--r--
file makesra.project 327 -rw-r--r--
file metadata 453 -rw-r--r--
file mock.flow 242894 -rw-r--r--
file mouse.design 126 -rw-r--r--
file output.fa 875 -rw-r--r--
file sample1.fa 266 -rw-r--r--
file sample2.fa 144 -rw-r--r--
file sample3.fa 465 -rw-r--r--
file samplebiom.biom1 302234 -rw-r--r--
file silva.ss.map.head 20 -rw-r--r--
file stool_small.count_table 766 -rw-r--r--
file stool_small.denovo.vsearch.accnos 28 -rw-r--r--
file stool_small.names 1344 -rw-r--r--
file stool_small.unique.fasta 12678 -rw-r--r--
file stool_small.vsearch.chimeras 4481 -rw-r--r--
file test_forward.fastq 2805 -rw-r--r--
file test_reverse.fastq 2805 -rw-r--r--
file testflow.flow 4544 -rw-r--r--
file toymothur.design 43 -rw-r--r--
file toymothur.design2 28 -rw-r--r--
file treetest.deunique.tre 53 -rw-r--r--
file treetest.groups 51 -rw-r--r--
file treetest.names 18 -rw-r--r--
file treetest.tre 32 -rw-r--r--
file veg.dist 10106 -rw-r--r--