Mercurial > repos > iuc > mothur_make_fastq
view test-data/biosample.source @ 9:f09c0a3bf8b9 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit dfdd4c590370ecb3a9806314d43eb5668e36a01a"
author | iuc |
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date | Fri, 22 Jan 2021 00:05:06 +0000 |
parents | c49147967884 |
children |
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if (package == "soil") { out << "#MIMARKS.survey.soil.4.0" << endl; if (requiredonly) { out << "#{sample name} {description of sample} {sample title} {description of library_construction_protocol} {http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=408169&lvl=3&keep=1&srchmode=1&unlock}" << endl; out << "#{text} {text} {text} {text} {controlled vacabulary}" << endl; out << "*sample_name *description *sample_title *seq_methods *organism" << endl; }else { out << "#{sample name} {description of sample} {sample title} {description of library_construction_protocol} {http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&id=408169&lvl=3&keep=1&srchmode=1&unlock} {soil classification from the FAO World Reference Database for Soil Resources}" << endl; out << "#{text} {text} {text} {text} {controlled vacabulary} {{term}}" << endl; out << "*sample_name *description *sample_title *seq_methods *organism fao_class" << endl; } } if ((package == "soil") ) {} vector<string> requiredFieldsForPackage; requiredFieldsForPackage.push_back("sample_name"); requiredFieldsForPackage.push_back("description"); requiredFieldsForPackage.push_back("sample_title"); requiredFieldsForPackage.push_back("seq_methods"); requiredFieldsForPackage.push_back("organism"); if (packageType == "MIMARKS.survey.soil.4.0") {}