Mercurial > repos > iuc > mothur_pca

view test-data/Mock_S280_L001_R1_001_small.trim.contigs.good.ref.uchime.alns @ 8:ee26037477a1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 4c950508328589b5215b6c96868659a03f9dead8"
author iuc
date Tue, 08 Dec 2020 13:35:45 +0000
parents 56400efc6755
children
line wrap: on
line source


------------------------------------------------------------------------
Query   (  253 nt) M00967_43_000000000-A3JHG_1_1101_18269_8162
ParentA (  542 nt) B.cereus.1
ParentB (  541 nt) S.mutans.1

A   178 TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCC 257
Q     1 TACGTAGGTGGCAAGCGTTATCCGGAATTATTGGGCGTAAAGCGCGCGCAGGTGGTTTCTTAAGTCTGATGTGAAAGCCC 80
B   178 TACGTAGGTccCgAGCGTTgTCCGGAtTTATTGGGCGTAAAGgGaGCGCAGGcGGTcaggaAAGTCTGgaGTaAAAGgCt 257
Diffs            AA A      A      A               A A       A   AAAAA       AA  A    A A
Votes            ++ +      +      +               + +       +   +++++       ++  +    + +
Model   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

A   258 ACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTG 337
Q    81 ACGGCTCAACCGTGGAGGGTCATTGGAAACTGGGAGACTTGAGTGCAGAAGAGGAAAGTGGAATTCCATGTGTAGCGGTG 160
B   258 AtGGCTCAACCaTaGtGtG-CtcTGGAAACTGtctGACTTGAGTGCAGAAGgGGAgAGTGGAATTCCATGTGTAGCGGTG 336
Diffs    A         A A A A   AA         AAA                A   A                        
Votes    +         + + + +   ++         +++                +   +                        
Model   AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

A   338 AAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAgGCGaCTtTCTGGTCTGTaACTGACaCTGAGGCgCGAAAGCGTG 417
Q   161 AAATGCGTAGAGATATGGAGGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTCACTGACGCTGAGGCTCGAAAGCGTG 240
B   337 AAATGCGTAGAtATATGGAGGAACACCAGTGGCGAAAGCGGCTCTCTGGTCTGTCACTGACGCTGAGGCTCGAAAGCGTG 416
Diffs              A                        B   B  B          B      B       B          
Votes              +                        +   +  +          +      +       +          
Model   AAAAAAAAAAAAxxxxxxxxxxxxxxxxxxxxxxxBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB

A   418 GGgAGCaAACAGG 430
Q   241 GGTAGCGAACAGG 253
B   417 GGTAGCGAACAGG 429
Diffs     B   B      
Votes     +   +      
Model   BBBBBBBBBBBBB

Ids.  QA 96.8%, QB 87.7%, AB 84.5%, QModel 100.0%, Div. +3.3%
Diffs Left 32: N 0, A 0, Y 32 (100.0%); Right 8: N 0, A 0, Y 8 (100.0%), Score 2.0408