annotate test-data/biosample.xml @ 0:f17cc7d2fa71 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d

<BioSampleAttributes>
  <Attribute>
    <Name>EDTA inhibitor tested</Name>
    <HarmonizedName>edta_inhibitor_tested</HarmonizedName>
    <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description>
    <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format>
    <Synonym>edta inhibitor tested</Synonym>
    <Package use="mandatory">Beta-lactamase.1.0</Package>
  </Attribute>
  <Attribute>
    <Name>FAO classification</Name>
    <HarmonizedName>fao_class</HarmonizedName>
    <Description>soil classification from the FAO World Reference Database for Soil Resources</Description>
    <Format>{term}</Format>
    <Synonym>fao class</Synonym>
    <Synonym>fao classification</Synonym>
    <Synonym>soil taxonomic/fao classification</Synonym>
    <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package>
    <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package>
    <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package>
    <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package>
    <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package>
    <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package>
  </Attribute>
  <Attribute>
    <Name>HIV status</Name>
    <HarmonizedName>hiv_stat</HarmonizedName>
    <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description>
    <Format>{boolean};{boolean}</Format>
    <Synonym>hiv stat</Synonym>
    <Synonym>hiv status</Synonym>
  </Attribute>
</BioSampleAttributes>