comparison rarefaction.shared.xml @ 5:419266a5e29e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 7f7605c2c8d8e92f3369dfdc290e5d8d06fa409a

4:325ecaad64c0

The rarefaction.shared_ command generates inter-sample rarefaction curves using a re-sampling without replacement approach. The traditional way that ecologists use rarefaction is not to randomize the sampling order within a sample, rather between samples. For instance, if we wanted to know the number of OTUs in the human colon, we might sample from various sites within the colon, and sequence a bunch of 16S rRNA genes. By determining the number of OTUs in each sample and comparing the composition of those samples it is possible to determine how well you have sampled the biodiversity within the individual.  For calc parameter choices see: https://www.mothur.org/wiki/Calculators

.. _rarefaction.shared: https://www.mothur.org/wiki/Rarefaction.shared

    ]]></help>
    <expand macro="citations"/>
</tool>

5:419266a5e29e

The rarefaction.shared_ command generates inter-sample rarefaction curves using a re-sampling without replacement approach. The traditional way that ecologists use rarefaction is not to randomize the sampling order within a sample, rather between samples. For instance, if we wanted to know the number of OTUs in the human colon, we might sample from various sites within the colon, and sequence a bunch of 16S rRNA genes. By determining the number of OTUs in each sample and comparing the composition of those samples it is possible to determine how well you have sampled the biodiversity within the individual.  For calc parameter choices see: https://www.mothur.org/wiki/Calculators

.. _rarefaction.shared: https://www.mothur.org/wiki/Rarefaction.shared

    ]]></help>
    <expand macro="citations">
        <citation type="bibtex"><![CDATA[
@book{magurran2013measuring,
  title={Measuring biological diversity},
  author={Magurran, Anne E},
  year={2013},
  publisher={John Wiley \& Sons}
}
        ]]></citation>
    </expand>
</tool>