# HG changeset patch
# User iuc
# Date 1604618209 0
# Node ID c8a364414b3438b6e208dc3db92cdc85451c8f1a
# Parent  2851c368b8795ec58be61e2084374e80dc09a845
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ff56a4c9218ddea84ff5cd72fd98c62db212465d"

diff -r 2851c368b879 -r c8a364414b34 macros.xml
--- a/macros.xml	Mon Dec 02 06:37:58 2019 -0500
+++ b/macros.xml	Thu Nov 05 23:16:49 2020 +0000
@@ -15,7 +15,7 @@
             <exit_code range="1:" level="fatal"/>
         </stdio>
     </xml>
-    <token name="@SHELL_OPTIONS@">set -o pipefail;</token>
+    <token name="@SHELL_OPTIONS@">set -o pipefail; export TERM=vt100; </token>
 
 
     <!-- Input parameters -->
diff -r 2851c368b879 -r c8a364414b34 seq.error.xml
--- a/seq.error.xml	Mon Dec 02 06:37:58 2019 -0500
+++ b/seq.error.xml	Thu Nov 05 23:16:49 2020 +0000
@@ -163,7 +163,7 @@
 **Command Documentation**
 
 The seq.error_ command evaluates error rate for sequences by comparing to the fasta-formatted template_alignment_.
-This is demonstrated in https://www.mothur.org/wiki/Schloss_SOP#Error_analysis
+This is demonstrated in https://mothur.org/wiki/miseq_sop/#assessing-error-rates
 
 .. _template_alignment: https://www.mothur.org/wiki/Alignment_database
 .. _seq.error: https://www.mothur.org/wiki/Seq.error