Mercurial > repos > iuc > mothur_summary_shared
comparison test-data/example.biom @ 0:eb727b7b76b4 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit a9d1e0debcd357d8080a1c6c5f1d206dd45a7a4d
author | iuc |
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date | Fri, 19 May 2017 05:23:17 -0400 |
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-1:000000000000 | 0:eb727b7b76b4 |
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1 { | |
2 "id":null, | |
3 "format": "Biological Observation Matrix 0.9.1-dev", | |
4 "format_url": "http://biom-format.org/documentation/format_versions/biom-1.0.html", | |
5 "type": "OTU table", | |
6 "generated_by": "QIIME revision 1.4.0-dev", | |
7 "date": "2011-12-19T19:00:00", | |
8 "rows":[ | |
9 {"id":"GG_OTU_1", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}}, | |
10 {"id":"GG_OTU_2", "metadata":{"taxonomy":["k__Bacteria", "p__Cyanobacteria", "c__Nostocophycideae", "o__Nostocales", "f__Nostocaceae", "g__Dolichospermum", "s__"]}}, | |
11 {"id":"GG_OTU_3", "metadata":{"taxonomy":["k__Archaea", "p__Euryarchaeota", "c__Methanomicrobia", "o__Methanosarcinales", "f__Methanosarcinaceae", "g__Methanosarcina", "s__"]}}, | |
12 {"id":"GG_OTU_4", "metadata":{"taxonomy":["k__Bacteria", "p__Firmicutes", "c__Clostridia", "o__Halanaerobiales", "f__Halanaerobiaceae", "g__Halanaerobium", "s__Halanaerobiumsaccharolyticum"]}}, | |
13 {"id":"GG_OTU_5", "metadata":{"taxonomy":["k__Bacteria", "p__Proteobacteria", "c__Gammaproteobacteria", "o__Enterobacteriales", "f__Enterobacteriaceae", "g__Escherichia", "s__"]}} | |
14 ], | |
15 "columns":[ | |
16 {"id":"Sample1", "metadata":{ | |
17 "BarcodeSequence":"CGCTTATCGAGA", | |
18 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
19 "BODY_SITE":"gut", | |
20 "Description":"human gut"}}, | |
21 {"id":"Sample2", "metadata":{ | |
22 "BarcodeSequence":"CATACCAGTAGC", | |
23 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
24 "BODY_SITE":"gut", | |
25 "Description":"human gut"}}, | |
26 {"id":"Sample3", "metadata":{ | |
27 "BarcodeSequence":"CTCTCTACCTGT", | |
28 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
29 "BODY_SITE":"gut", | |
30 "Description":"human gut"}}, | |
31 {"id":"Sample4", "metadata":{ | |
32 "BarcodeSequence":"CTCTCGGCCTGT", | |
33 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
34 "BODY_SITE":"skin", | |
35 "Description":"human skin"}}, | |
36 {"id":"Sample5", "metadata":{ | |
37 "BarcodeSequence":"CTCTCTACCAAT", | |
38 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
39 "BODY_SITE":"skin", | |
40 "Description":"human skin"}}, | |
41 {"id":"Sample6", "metadata":{ | |
42 "BarcodeSequence":"CTAACTACCAAT", | |
43 "LinkerPrimerSequence":"CATGCTGCCTCCCGTAGGAGT", | |
44 "BODY_SITE":"skin", | |
45 "Description":"human skin"}} | |
46 ], | |
47 "matrix_type": "dense", | |
48 "matrix_element_type": "int", | |
49 "shape": [5,6], | |
50 "data": [[0,0,1,0,0,0], | |
51 [5,1,0,2,3,1], | |
52 [0,0,1,4,2,0], | |
53 [2,1,1,0,0,1], | |
54 [0,1,1,0,0,0]] | |
55 } |