[2017-09-28 17:24:01,554] multiqc                                            [DEBUG  ]  No MultiQC config found: /Users/bebatut/miniconda3/envs/multiqc2/lib/python2.7/site-packages/multiqc-1.2-py2.7.egg/multiqc_config.yaml
[2017-09-28 17:24:01,554] multiqc                                            [DEBUG  ]  No MultiQC config found: /Users/bebatut/.multiqc_config.yaml
[2017-09-28 17:24:01,554] multiqc                                            [DEBUG  ]  No MultiQC config found: multiqc_config.yaml
[2017-09-28 17:24:01,554] multiqc                                            [DEBUG  ]  Command used: /Users/bebatut/miniconda3/envs/multiqc2/bin/multiqc multiqc_WDir
[2017-09-28 17:24:02,209] multiqc                                            [DEBUG  ]  Latest MultiQC version is v1.2
[2017-09-28 17:24:02,210] multiqc                                            [INFO   ]  This is MultiQC v1.2
[2017-09-28 17:24:02,210] multiqc                                            [DEBUG  ]  Command     : /Users/bebatut/miniconda3/envs/multiqc2/bin/multiqc multiqc_WDir
[2017-09-28 17:24:02,210] multiqc                                            [DEBUG  ]  Working dir : /Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc
[2017-09-28 17:24:02,210] multiqc                                            [INFO   ]  Template    : default
[2017-09-28 17:24:02,210] multiqc                                            [INFO   ]  Searching 'multiqc_WDir'
[2017-09-28 17:24:02,211] multiqc                                            [DEBUG  ]  Analysing modules: afterqc, custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rseqc, busco, goleft_indexcov, disambiguate, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bismark, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, fastqc, clusterflow, bcl2fastq
[2017-09-28 17:24:02,249] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig
[2017-09-28 17:24:05,021] multiqc.modules.afterqc.afterqc                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,098] multiqc.modules.custom_content.custom_content      [DEBUG  ]  No custom content found
[2017-09-28 17:24:05,144] multiqc.modules.conpair.conpair                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,235] multiqc.modules.peddy.peddy                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,259] multiqc.modules.methylQA.methylQA                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,306] multiqc.modules.qualimap.QM_BamQC                  [DEBUG  ]  Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2017-09-28 17:24:05,306] multiqc.modules.qualimap.qualimap                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,315] multiqc.modules.preseq.preseq                      [DEBUG  ]  Could not find any preseq data in ('multiqc_WDir',)
[2017-09-28 17:24:05,329] multiqc.modules.quast.quast                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,347] multiqc.modules.qorts.qorts                        [DEBUG  ]  Could not find any QoRTs data in ('multiqc_WDir',)
[2017-09-28 17:24:05,394] multiqc.modules.rna_seqc.rna_seqc                  [DEBUG  ]  Could not find any RNA-SeQC data in ('multiqc_WDir',)
[2017-09-28 17:24:05,424] multiqc.modules.rseqc.rseqc                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,430] multiqc.modules.busco.busco                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,469] multiqc.modules.goleft_indexcov.goleft_indexcov    [DEBUG  ]  Did not find goleft indexcov outputs in ('multiqc_WDir',)
[2017-09-28 17:24:05,475] multiqc.modules.disambiguate.disambiguate          [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2017-09-28 17:24:05,499] multiqc.modules.homer.homer                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,513] multiqc.modules.macs2.macs2                        [DEBUG  ]  Could not find any MACS2 data in ('multiqc_WDir',)
[2017-09-28 17:24:05,552] multiqc.modules.theta2.theta2                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,571] multiqc.modules.snpeff.snpeff                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2017-09-28 17:24:05,637] multiqc.modules.gatk.gatk                          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,693] multiqc.modules.htseq.htseq                        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,757] multiqc.modules.bcftools.bcftools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,787] multiqc.modules.featureCounts.feature_counts       [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,868] multiqc.modules.picard.picard                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,874] multiqc.modules.prokka.prokka                      [DEBUG  ]  Could not find any Prokka data in ('multiqc_WDir',)
[2017-09-28 17:24:05,881] multiqc.modules.samblaster.samblaster              [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2017-09-28 17:24:05,915] multiqc.modules.samtools.samtools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,931] multiqc.modules.bamtools.bamtools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:05,942] multiqc.modules.jellyfish.jellyfish                [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2017-09-28 17:24:06,029] multiqc.modules.vcftools.vcftools                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,064] multiqc.modules.bismark.bismark                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,083] multiqc.modules.hicup.hicup                        [DEBUG  ]  Could not find any HiCUP data in ('multiqc_WDir',)
[2017-09-28 17:24:06,107] multiqc.modules.salmon.salmon                      [DEBUG  ]  Could not find any Salmon data in ('multiqc_WDir',)
[2017-09-28 17:24:06,145] multiqc.modules.kallisto.kallisto                  [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,187] multiqc.modules.slamdunk.slamdunk                  [DEBUG  ]  No slamdunk reports found.
[2017-09-28 17:24:06,207] multiqc.modules.star.star                          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,225] multiqc.modules.hisat2.hisat2                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,238] multiqc.modules.tophat.tophat                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,245] multiqc.modules.bowtie2.bowtie2                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,250] multiqc.modules.bowtie1.bowtie1                    [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,263] multiqc.modules.leehom.leehom                      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,273] multiqc.modules.adapterRemoval.adapterRemoval      [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,299] multiqc.modules.cutadapt.cutadapt                  [INFO   ]  Found 1 reports
[2017-09-28 17:24:06,351] multiqc.modules.flexbar.flexbar                    [INFO   ]  Found 1 logs
[2017-09-28 17:24:06,378] multiqc.modules.trimmomatic.trimmomatic            [INFO   ]  Found 1 logs
[2017-09-28 17:24:06,403] multiqc.modules.skewer.skewer                      [DEBUG  ]  Could not find any data in ('multiqc_WDir',)
[2017-09-28 17:24:06,421] multiqc.modules.sortmerna.sortmerna                [INFO   ]  Found 1 logs
[2017-09-28 17:24:06,441] multiqc.modules.biobloomtools.biobloomtools        [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,448] multiqc.modules.fastq_screen.fastq_screen          [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,605] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 2 reports
[2017-09-28 17:24:06,908] multiqc.modules.clusterflow.clusterflow            [DEBUG  ]  Could not find any reports in ('multiqc_WDir',)
[2017-09-28 17:24:06,914] multiqc.modules.bcl2fastq.bcl2fastq                [DEBUG  ]  Could not find any bcl2fastq data in ('multiqc_WDir',)
[2017-09-28 17:24:06,923] multiqc                                            [INFO   ]  Compressing plot data
[2017-09-28 17:24:07,121] multiqc                                            [INFO   ]  Report      : multiqc_report.html
[2017-09-28 17:24:07,121] multiqc                                            [INFO   ]  Data        : multiqc_data
[2017-09-28 17:24:07,121] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_cutadapt.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,121] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_fastqc.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,122] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_flexbar.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,122] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_general_stats.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,122] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_sortmerna.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,122] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_sources.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,122] multiqc                                            [DEBUG  ]  Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmp7lPIig/multiqc_data/multiqc_trimmomatic.txt' to '/Users/bebatut/Documents/post_doc_freiburg/galaxy_projects/tools/tools-iuc/tools/multiqc/multiqc_data'
[2017-09-28 17:24:07,952] multiqc                                            [INFO   ]  MultiQC complete
