Mercurial > repos > iuc > multiqc
comparison test-data/hicexplorer1.log @ 6:01237d721a9f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
| author | iuc |
|---|---|
| date | Sat, 23 Dec 2017 15:57:55 -0500 |
| parents | |
| children |
comparison
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| 5:5746cb5cf08d | 6:01237d721a9f |
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| 1 | |
| 2 File small_test_matrix.h5 | |
| 3 Pairs considered 99983 | |
| 4 Min rest. site distance 303 | |
| 5 Max rest. site distance 800 | |
| 6 | |
| 7 # count (percentage w.r.t. total sequenced reads) | |
| 8 Pairs mappable, unique and high quality 52726 (52.73) | |
| 9 Pairs used 37321 (37.33) | |
| 10 One mate unmapped 8777 (8.78) | |
| 11 One mate not unique 3603 (3.60) | |
| 12 One mate low quality 34877 (34.88) | |
| 13 | |
| 14 # count (percentage w.r.t. mappable, unique and high quality pairs) | |
| 15 dangling end 0 (0.00) | |
| 16 self ligation (removed) 0 (0.00) | |
| 17 One mate not close to rest site 0 (0.00) | |
| 18 same fragment (800 bp) 15393 (29.19) | |
| 19 self circle 0 (0.00) | |
| 20 duplicated pairs 12 (0.02) | |
| 21 | |
| 22 # count (percentage w.r.t. total valid pairs used) | |
| 23 inter chromosomal 5955 (15.96) | |
| 24 short range < 20kb 8853 (23.72) | |
| 25 long range 22513 (60.32) | |
| 26 inward pairs 7145 (19.14) | |
| 27 outward pairs 9731 (26.07) | |
| 28 left pairs 7156 (19.17) | |
| 29 right pairs 7334 (19.65) |