Mercurial > repos > iuc > multiqc

comparison test-data/post_aligner_soft_stats.tabular @ 6:01237d721a9f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit d9175b08720c657b7a4521472450dd5ac6fd9361
author iuc
date Sat, 23 Dec 2017 15:57:55 -0500
parents 3bad335ccea9
children e0f4a651c6b9
comparison
equal deleted inserted replaced
5:5746cb5cf08d 6:01237d721a9f
1 Sample QUAST_N50 QUAST_Total_length featureCounts_percent_assigned featureCounts_Assigned Picard_PCT_PF_READS_ALIGNED Prokka_organism Prokka_contigs Prokka_bases Prokka_CDS Bcftools Stats_number_of_records Bcftools Stats_number_of_SNPs Bcftools Stats_number_of_indels Bcftools Stats_tstv Bcftools Stats_number_of_MNPs Bamtools_duplicates_pct Bamtools_mapped_reads_pct Picard_PERCENT_DUPLICATION Picard_summed_median Picard_summed_mean GATK VariantEval_known_titv GATK VariantEval_novel_titv HTSeq Count_percent_assigned HTSeq Count_assigned Picard_PCT_RIBOSOMAL_BASES Picard_PCT_MRNA_BASES Samtools Flagstat_mapped_passed Samtools Stats_error_rate Samtools Stats_non_primary_alignments Samtools Stats_reads_mapped Samtools Stats_reads_mapped_percent Samtools Stats_raw_total_sequences Samblaster_pct_dups 1 Sample QUAST_N50-2-1 QUAST_Total_length-2-1 featureCounts_Assigned-1 featureCounts_percent_assigned-1-1 Picard_PCT_PF_READS_ALIGNED-1 Prokka_contigs-1 Prokka_bases-1 Prokka_CDS-1 Prokka_organism-1 Bcftools Stats_number_of_SNPs-1 Bcftools Stats_tstv-1 Bcftools Stats_number_of_records-1 Bcftools Stats_number_of_MNPs-1 Bcftools Stats_number_of_indels-1 Bamtools_duplicates_pct-1-1 Bamtools_mapped_reads_pct-1-1 Picard_PERCENT_DUPLICATION-1 Picard_summed_mean-1 Picard_summed_median-1 HTSeq Count_percent_assigned-2 HTSeq Count_assigned-1 Picard_PCT_RIBOSOMAL_BASES-1 Picard_PCT_MRNA_BASES-1 Samtools Flagstat_mapped_passed-1-1 Samtools Stats_reads_mapped_percent-1 Samtools Stats_raw_total_sequences-1-1 Samtools Stats_reads_mapped-1 Samtools Stats_error_rate-1 Samtools Stats_non_primary_alignments-1 GATK VariantEval_known_titv-1 GATK VariantEval_novel_titv-1 Samblaster_pct_dups-1
2 14892_1#15 115136.0 18435361.0 2 14892_1#15 115136.0 18435361.0
3 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797 3 70: TopHat on data 1, data 4, and data 3: accepted_hits 321797 70.82267755353567
4 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012 4 75: TopHat on data 1, data 6, and data 5: accepted_hits 445012 69.58585803304067
5 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981 5 80: TopHat on data 1, data 8, and data 7: accepted_hits 394981 71.76957768385707
6 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485 6 85: TopHat on data 1, data 10, and data 9: accepted_hits 437485 72.02454351337069
7 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170 7 90: TopHat on data 1, data 12, and data 11: accepted_hits 388170 71.33130826437625
8 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929 8 95: TopHat on data 1, data 14, and data 13: accepted_hits 453929 70.72517103678439
9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085
10 Sample1 Helicobacter pylori 30 1629978 1548 10 Sample1 30 1629978 1548 Helicobacter pylori
11 Sample2 Escherichia coli 52 162997532523 1548 11 Sample2 52 162997532523 1548 Escherichia coli
12 Test1 5522770.0 4474244.0 902934.0 1.97 72330.0 12 Test1 4474244.0 1.97 5522770.0 72330.0 902934.0
13 bamtools 0.0 93.125 13 bamtools 0.0 93.125
14 dataset_114 0.005582 14 dataset_114 0.005582
15 dataset_197 176 271.809759 15 dataset_197 271.809759 176
16 gatk_varianteval 0.0 2.2 16 htseq 0.0 0
17 htseq 0.0 0 17 picard_CollectRnaSeqMetrics_bam 79.62310000000001
18 picard_CollectRnaSeqMetrics_bam 79.62310000000001 18 samtools_flagstat 20689039
19 samtools_flagstat 20689039 19 samtools_stats 100.0 641821.0 641821.0 0.004248509 12111.0
20 samtools_stats 0.004248509 12111.0 641821.0 100.0 641821.0 20 varianteval_1_gatk_varianteval 0.0 2.2
21 virtual-normal 1.28 21 virtual-normal 1.28