Mercurial > repos > iuc > multiqc
comparison test-data/samblaster.txt @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:29:59 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:3bad335ccea9 |
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| 1 samblaster: Version 0.1.22 | |
| 2 samblaster: Inputting from stdin | |
| 3 samblaster: Outputting to stdout | |
| 4 samblaster: Opening /vagrant/test-out6/virtual-normal-samblaster-markdups.txt for write. | |
| 5 [bam_header_read] EOF marker is absent. The input is probably truncated. | |
| 6 [M::mem_pestat] skip orientation FF as there are not enough pairs | |
| 7 [M::mem_pestat] skip orientation FR as there are not enough pairs | |
| 8 [M::mem_pestat] skip orientation RF as there are not enough pairs | |
| 9 [M::mem_pestat] skip orientation RR as there are not enough pairs | |
| 10 samblaster: Loaded 86 header sequence entries. | |
| 11 samblaster: Removed 1 of 78 (1.28%) read ids as duplicates using 1724k memory in 0.000S CPU seconds and 31S wall time. | |
| 12 [main] Version: 0.7.7-r441 | |
| 13 [main] CMD:[samopen] SAM header is present: 86 sequences. | |
| 14 bwa mem -M -v 1 -R @RG\tID:virtual-normal\tSM:virtual-normal\tLB:virtual-normal\tPL:ILLUMINA -t 2 /proj/b2010040/private/nobackup/autoseq-genome/bwa/human_g1k_v37_decoy.fasta /vagrant/test-out6/skewer/virtual-normal_1.fastq.gz /vagrant/test-out6/skewer/virtual-normal_2.fastq.gz | |
| 15 [main] Real time: 30.780 sec; CPU: 13.292 sec |