Mercurial > repos > iuc > multiqc

comparison test-data/post_aligner_soft_stats.tabular @ 8:e0f4a651c6b9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 13875b17a3a5259b9705529a3597bea12828cb20
author iuc
date Fri, 20 Apr 2018 01:06:25 -0400
parents 01237d721a9f
children 1c2db0054039
comparison
equal deleted inserted replaced
7:467486f1c568 8:e0f4a651c6b9
1 Sample QUAST_N50-2-1 QUAST_Total_length-2-1 featureCounts_Assigned-1 featureCounts_percent_assigned-1-1 Picard_PCT_PF_READS_ALIGNED-1 Prokka_contigs-1 Prokka_bases-1 Prokka_CDS-1 Prokka_organism-1 Bcftools Stats_number_of_SNPs-1 Bcftools Stats_tstv-1 Bcftools Stats_number_of_records-1 Bcftools Stats_number_of_MNPs-1 Bcftools Stats_number_of_indels-1 Bamtools_duplicates_pct-1-1 Bamtools_mapped_reads_pct-1-1 Picard_PERCENT_DUPLICATION-1 Picard_summed_mean-1 Picard_summed_median-1 HTSeq Count_percent_assigned-2 HTSeq Count_assigned-1 Picard_PCT_RIBOSOMAL_BASES-1 Picard_PCT_MRNA_BASES-1 Samtools Flagstat_mapped_passed-1-1 Samtools Stats_reads_mapped_percent-1 Samtools Stats_raw_total_sequences-1-1 Samtools Stats_reads_mapped-1 Samtools Stats_error_rate-1 Samtools Stats_non_primary_alignments-1 GATK VariantEval_known_titv-1 GATK VariantEval_novel_titv-1 Samblaster_pct_dups-1 1 Sample QUAST_mqc-generalstats-N50 QUAST_mqc-generalstats-Total_length featureCounts_mqc-generalstats-percent_assigned featureCounts_mqc-generalstats-Assigned Picard_mqc-generalstats-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-contigs Prokka_mqc-generalstats-organism Prokka_mqc-generalstats-bases Prokka_mqc-generalstats-CDS Bcftools Stats_mqc-generalstats-tstv Bcftools Stats_mqc-generalstats-number_of_MNPs Bcftools Stats_mqc-generalstats-number_of_indels Bcftools Stats_mqc-generalstats-number_of_SNPs Bcftools Stats_mqc-generalstats-number_of_records Bamtools_mqc-generalstats-duplicates_pct Bamtools_mqc-generalstats-mapped_reads_pct Picard_mqc-generalstats-PERCENT_DUPLICATION Picard_mqc-generalstats-summed_median Picard_mqc-generalstats-summed_mean GATK VariantEval_mqc-generalstats-known_titv GATK VariantEval_mqc-generalstats-novel_titv HTSeq Count_mqc-generalstats-percent_assigned HTSeq Count_mqc-generalstats-assigned Picard_mqc-generalstats-PCT_MRNA_BASES Picard_mqc-generalstats-PCT_RIBOSOMAL_BASES Samtools Flagstat_mqc-generalstats-mapped_passed Samtools Stats_mqc-generalstats-raw_total_sequences Samtools Stats_mqc-generalstats-non_primary_alignments Samtools Stats_mqc-generalstats-reads_mapped Samtools Stats_mqc-generalstats-error_rate Samtools Stats_mqc-generalstats-reads_mapped_percent SnpEff_mqc-generalstats-Ts_Tv_ratio SnpEff_mqc-generalstats-Number_of_variants_before_filter SnpEff_mqc-generalstats-Change_rate Samblaster_mqc-generalstats-pct_dups
2 14892_1#15 115136.0 18435361.0 2 14892_1#15 115136.0 18435361.0
3 70: TopHat on data 1, data 4, and data 3: accepted_hits 321797 70.82267755353567 3 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797
4 75: TopHat on data 1, data 6, and data 5: accepted_hits 445012 69.58585803304067 4 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012
5 80: TopHat on data 1, data 8, and data 7: accepted_hits 394981 71.76957768385707 5 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981
6 85: TopHat on data 1, data 10, and data 9: accepted_hits 437485 72.02454351337069 6 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485
7 90: TopHat on data 1, data 12, and data 11: accepted_hits 388170 71.33130826437625 7 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170
8 95: TopHat on data 1, data 14, and data 13: accepted_hits 453929 70.72517103678439 8 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929
9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 9 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085
10 Sample1 30 1629978 1548 Helicobacter pylori 10 Sample1 30 Helicobacter pylori 1629978 1548
11 Sample2 52 162997532523 1548 Escherichia coli 11 Sample2 52 Escherichia coli 162997532523 1548
12 Test1 4474244.0 1.97 5522770.0 72330.0 902934.0 12 Test1 1.97 72330.0 902934.0 4474244.0 5522770.0
13 bamtools 0.0 93.125 13 bamtools 0.0 93.125
14 dataset_114 0.005582 14 dataset_114 0.005582
15 dataset_197 271.809759 176 15 dataset_197 176 271.809759
16 htseq 0.0 0 16 gatk_varianteval 0.0 2.2
17 picard_CollectRnaSeqMetrics_bam 79.62310000000001 17 htseq 0.0 0
18 samtools_flagstat 20689039 18 picard_CollectRnaSeqMetrics_bam 79.62310000000001
19 samtools_stats 100.0 641821.0 641821.0 0.004248509 12111.0 19 samtools_flagstat 20689039
20 varianteval_1_gatk_varianteval 0.0 2.2 20 samtools_stats 641821.0 12111.0 641821.0 0.004248509 100.0
21 virtual-normal 1.28 21 snpeff 0.0 972155.0 3190.0
22 virtual-normal 1.28