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comparison test-data/macs_1.txt @ 11:f0ec41881020 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit c9c5c4dd15aed950ed9b43a294ce6c41f5732a23
author iuc
date Mon, 06 Aug 2018 10:42:11 -0400
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10:ce0f144f4835 11:f0ec41881020
1 # This file is generated by MACS version 2.1.1.20160309
2 # Command line: callpeak --name treat1 -t /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_1.dat -c /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat --format BED --gsize 2700000000 --keep-dup 1 --qvalue 0.05 --mfold 5 50 --bw 300
3 # ARGUMENTS LIST:
4 # name = treat1
5 # format = BED
6 # ChIP-seq file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_1.dat']
7 # control file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat']
8 # effective genome size = 2.70e+09
9 # band width = 300
10 # model fold = [5, 50]
11 # qvalue cutoff = 5.00e-02
12 # Larger dataset will be scaled towards smaller dataset.
13 # Range for calculating regional lambda is: 1000 bps and 10000 bps
14 # Broad region calling is off
15 # Paired-End mode is off
16
17 # tag size is determined as 100 bps
18 # total tags in treatment: 199977
19 # tags after filtering in treatment: 199583
20 # maximum duplicate tags at the same position in treatment = 1
21 # Redundant rate in treatment: 0.00
22 # total tags in control: 199978
23 # tags after filtering in control: 199867
24 # maximum duplicate tags at the same position in control = 1
25 # Redundant rate in control: 0.00
26 # d = 254
27 # alternative fragment length(s) may be 254 bps
28 chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name
29 chr1 840082 840400 319 840240 4.00 10.71801 4.90785 7.08620 MACS2_peak_1
30 chr1 919420 919785 366 919550 5.00 12.44148 5.85158 8.70936 MACS2_peak_2
31 chr1 937221 937483 263 937375 4.00 10.06728 4.87632 6.61759 MACS2_peak_3
32 chr1 954743 954996 254 954814 3.00 8.29236 3.92628 4.97243 MACS2_peak_4
33 chr1 994763 995016 254 994906 3.00 8.29236 3.92628 4.97243 MACS2_peak_5
34 chr1 1057395 1057648 254 1057509 3.00 8.29236 3.92628 4.97243 MACS2_peak_6
35 chr1 1240580 1241004 425 1240777 3.00 7.77216 3.90105 4.60940 MACS2_peak_7
36 chr1 1307393 1307735 343 1307601 5.00 12.44148 5.85158 8.70936 MACS2_peak_8
37 chr1 1440351 1440633 283 1440462 4.00 10.71801 4.90785 7.08620 MACS2_peak_9
38 chr1 1555433 1555725 293 1555571 4.00 10.71801 4.90785 7.08620 MACS2_peak_10
39 chr1 1590668 1590946 279 1590840 4.00 10.06728 4.87632 6.61759 MACS2_peak_11
40 chr1 1837669 1838104 436 1837886 6.00 14.88256 6.82684 10.84922 MACS2_peak_12
41 chr1 1840366 1840828 463 1840547 5.00 13.22276 5.88942 9.29290 MACS2_peak_13
42 chr1 1976400 1976653 254 1976469 3.00 8.29236 3.92628 4.97243 MACS2_peak_14
43 chr1 2071302 2071627 326 2071423 4.00 10.71801 4.90785 7.08620 MACS2_peak_15
44 chr1 2105717 2106140 424 2105919 4.00 7.70001 4.64644 4.60940 MACS2_peak_16
45 chr1 2126522 2126861 340 2126648 4.00 10.06728 4.87632 6.61759 MACS2_peak_17
46 chr1 2246521 2246954 434 2246712 5.00 9.59761 5.57573 6.23289 MACS2_peak_18
47 chr1 2313158 2313560 403 2313353 5.00 13.22276 5.88942 9.29290 MACS2_peak_19
48 chr1 2345828 2346242 415 2346028 7.00 17.38158 7.80211 13.02598 MACS2_peak_20
49 chr1 2510055 2510308 254 2510213 3.00 8.29236 3.92628 4.97243 MACS2_peak_21
50 chr1 3341408 3341661 254 3341461 3.00 7.77216 3.90105 4.60940 MACS2_peak_22
51 chr1 3369639 3369892 254 3369863 3.00 8.29236 3.92628 4.97243 MACS2_peak_23
52 chr1 3400441 3400769 329 3400610 4.00 10.71801 4.90785 7.08620 MACS2_peak_24
53 chr1 3407841 3408094 254 3407975 3.00 8.29236 3.92628 4.97243 MACS2_peak_25
54 chr1 3481748 3482245 498 3481863 4.00 10.71801 4.90785 7.08620 MACS2_peak_26
55 chr1 3535562 3535821 260 3535663 3.00 8.29236 3.92628 4.97243 MACS2_peak_27
56 chr1 3537757 3538010 254 3537960 3.00 8.29236 3.92628 4.97243 MACS2_peak_28
57 chr1 3593610 3593863 254 3593838 3.00 7.77216 3.90105 4.60940 MACS2_peak_29
58 chr1 3640884 3641366 483 3641134 12.00 30.54970 12.67843 24.90331 MACS2_peak_30
59 chr1 3702144 3702397 254 3702260 3.00 7.77216 3.90105 4.60940 MACS2_peak_31
60 chr1 3773699 3774058 360 3773876 7.00 18.42402 7.85256 13.89198 MACS2_peak_32
61 chr1 3827306 3827722 417 3827525 5.00 13.22276 5.88942 9.29290 MACS2_peak_33
62 chr1 4712784 4713037 254 4712904 3.00 8.29236 3.92628 4.97243 MACS2_peak_34
63 chr1 4886187 4886440 254 4886326 3.00 7.77216 3.90105 4.60940 MACS2_peak_35
64 chr1 5569919 5570198 280 5570056 4.00 10.71801 4.90785 7.08620 MACS2_peak_36
65 chr1 5574777 5575080 304 5574838 3.00 8.29236 3.92628 4.97243 MACS2_peak_37
66 chr1 5805838 5806091 254 5805965 2.00 5.96348 2.94471 2.92914 MACS2_peak_38
67 chr1 5976146 5976399 254 5976235 3.00 8.29236 3.92628 4.97243 MACS2_peak_39
68 chr1 6094646 6094899 254 6094678 2.00 5.96348 2.94471 2.92914 MACS2_peak_40
69 chr1 6112957 6113210 254 6113135 3.00 6.57684 3.80689 3.50364 MACS2_peak_41
70 chr1 6265253 6265640 388 6265437 6.00 11.56197 6.50502 7.91704 MACS2_peak_42
71 chr1 6305229 6305482 254 6305299 3.00 8.29236 3.92628 4.97243 MACS2_peak_43
72 chr1 6306874 6307127 254 6307013 3.00 8.29236 3.92628 4.97243 MACS2_peak_44
73 chr1 6403481 6403843 363 6403679 6.00 15.79441 6.87099 11.56042 MACS2_peak_45
74 chr1 6464657 6465096 440 6464869 6.00 11.56197 6.50502 7.91704 MACS2_peak_46
75 chr1 6483604 6483857 254 6483739 3.00 8.29236 3.92628 4.97243 MACS2_peak_47
76 chr1 6498110 6498494 385 6498258 6.00 14.88256 6.82684 10.84922 MACS2_peak_48
77 chr1 6535513 6535838 326 6535591 5.00 13.22276 5.88942 9.29290 MACS2_peak_49
78 chr1 6614468 6614882 415 6614708 4.00 10.06728 4.87632 6.61759 MACS2_peak_50
79 chr1 6706586 6706931 346 6706743 5.00 13.22276 5.88942 9.29290 MACS2_peak_51
80 chr1 6761833 6762203 371 6762039 7.00 14.98313 7.61377 10.92185 MACS2_peak_52
81 chr1 6780092 6780471 380 6780329 6.00 15.79441 6.87099 11.56042 MACS2_peak_53
82 chr1 6787475 6787900 426 6787704 7.00 18.42402 7.85256 13.89198 MACS2_peak_54
83 chr1 6949953 6950377 425 6950153 5.00 10.64473 5.71033 7.08620 MACS2_peak_55
84 chr1 7102753 7103077 325 7102915 4.00 10.71801 4.90785 7.08620 MACS2_peak_56
85 chr1 7278317 7278718 402 7278483 6.00 15.79441 6.87099 11.56042 MACS2_peak_57
86 chr1 7868456 7868722 267 7868577 4.00 10.71801 4.90785 7.08620 MACS2_peak_58
87 chr1 7962797 7963068 272 7962862 3.00 7.77216 3.90105 4.60940 MACS2_peak_59
88 chr1 8042368 8042722 355 8042491 6.00 14.88256 6.82684 10.84922 MACS2_peak_60
89 chr1 8075039 8075466 428 8075252 6.00 12.78498 6.66205 9.02328 MACS2_peak_61
90 chr1 8076577 8076851 275 8076739 4.00 8.57130 4.75861 5.22097 MACS2_peak_62
91 chr1 8091217 8091506 290 8091352 4.00 10.71801 4.90785 7.08620 MACS2_peak_63
92 chr1 8374359 8374715 357 8374570 6.00 15.79441 6.87099 11.56042 MACS2_peak_64
93 chr1 8408996 8409352 357 8409218 4.00 10.71801 4.90785 7.08620 MACS2_peak_65
94 chr1 8731417 8731750 334 8731570 4.00 10.06728 4.87632 6.61759 MACS2_peak_66
95 chr1 8786590 8786948 359 8786756 7.00 12.59445 7.26312 8.86075 MACS2_peak_67
96 chr1 8908916 8909169 254 8909002 2.00 5.57376 2.92579 2.70690 MACS2_peak_68
97 chr1 8978204 8978524 321 8978356 5.00 13.22276 5.88942 9.29290 MACS2_peak_69
98 chr1 9048092 9048380 289 9048260 4.00 8.57130 4.75861 5.22097 MACS2_peak_70
99 chr1 9065105 9065592 488 9065349 5.00 13.22276 5.88942 9.29290 MACS2_peak_71
100 chr1 9069997 9070429 433 9070211 4.00 10.71801 4.90785 7.08620 MACS2_peak_72