diff test-data/fastqc_1.txt @ 0:3bad335ccea9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/fastqc_1.txt	Tue Oct 24 06:29:59 2017 -0400
@@ -0,0 +1,2181 @@
+##FastQC	0.11.4
+>>Basic Statistics	pass
+#Measure	Value
+Filename	poulet5_1
+File type	Conventional base calls
+Encoding	Sanger / Illumina 1.9
+Total Sequences	267849
+Sequences flagged as poor quality	0
+Sequence length	101
+%GC	48
+>>END_MODULE
+>>Per base sequence quality	warn
+#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
+1	20.91988023102569	21.0	21.0	21.0	21.0	21.0
+2	20.71684045861661	21.0	20.0	22.0	19.0	23.0
+3	20.351574954545285	21.0	20.0	21.0	18.0	22.0
+4	22.531542025544244	23.0	22.0	24.0	20.0	24.0
+5	24.673566076408722	25.0	24.0	26.0	24.0	26.0
+6	25.813099918237516	26.0	25.0	27.0	25.0	27.0
+7	27.587864804423386	28.0	27.0	29.0	26.0	29.0
+8	27.598941941168345	28.0	27.0	29.0	26.0	29.0
+9	27.07115949658203	28.0	26.0	28.0	26.0	28.0
+10-11	27.129873548155864	28.0	26.0	28.0	25.5	28.0
+12-13	27.009298149330405	27.5	26.0	28.0	25.5	28.0
+14-15	27.123565889736383	28.0	26.5	28.0	26.0	28.0
+16-17	27.086309823818645	28.0	26.0	28.0	26.0	28.0
+18-19	27.07924614241606	28.0	26.0	28.0	25.5	28.0
+20-21	27.082520375286073	28.0	26.0	28.0	26.0	28.0
+22-23	27.054301117420636	28.0	26.0	28.0	25.0	28.0
+24-25	27.06350966402712	28.0	26.0	28.0	25.0	28.0
+26-27	27.082996389756914	28.0	26.0	28.0	26.0	28.0
+28-29	27.065495857740743	28.0	26.0	28.0	25.5	28.0
+30-31	27.09608772106672	28.0	26.0	28.0	26.0	28.0
+32-33	27.087097581099798	28.0	26.0	28.0	26.0	28.0
+34-35	27.098251253504774	28.0	26.5	28.0	26.0	28.0
+36-37	27.05184077595959	28.0	26.0	28.0	25.5	28.0
+38-39	27.06521958267531	28.0	26.0	28.0	26.0	28.0
+40-41	27.072148859992012	28.0	26.0	28.0	26.0	28.0
+42-43	27.065725464720796	28.0	26.0	28.0	25.5	28.0
+44-45	27.07168031241483	28.0	26.5	28.0	25.5	28.0
+46-47	27.048083061725073	28.0	26.0	28.0	25.5	28.0
+48-49	27.04642354460909	28.0	26.0	28.0	25.5	28.0
+50-51	27.062865644448927	28.0	26.0	28.0	25.5	28.0
+52-53	27.01859629866081	28.0	26.0	28.0	25.0	28.0
+54-55	26.994157155710866	27.5	26.0	28.0	25.0	28.0
+56-57	27.110127347871376	28.0	27.0	28.0	26.0	28.0
+58-59	26.995846540401494	27.5	26.0	28.0	25.0	28.0
+60-61	27.00461640700544	27.5	26.0	28.0	25.0	28.0
+62-63	26.981614641085088	27.5	26.5	28.0	25.5	28.5
+64-65	26.98900313236189	28.0	26.0	28.0	25.0	28.0
+66-67	27.001189102815392	28.0	26.0	28.0	25.0	28.0
+68-69	26.917739099268616	27.5	26.0	28.0	25.0	28.5
+70-71	26.98481793846533	28.0	27.0	28.0	25.0	29.0
+72-73	26.89518908041471	27.5	26.5	28.0	25.0	28.5
+74-75	26.93677034448514	28.0	27.0	28.0	25.0	29.0
+76-77	26.87640237596556	28.0	26.5	28.0	25.0	29.0
+78-79	26.906094478605482	28.0	27.0	28.0	25.0	29.0
+80-81	26.80463992772047	28.0	26.5	28.0	25.0	29.0
+82-83	26.717012197170796	28.0	26.5	28.0	25.0	29.0
+84-85	26.46960974280285	27.5	26.5	28.0	25.0	29.0
+86-87	26.442842795754324	27.5	26.5	28.0	25.0	29.0
+88-89	26.34282375517549	28.0	26.0	28.0	25.0	29.0
+90-91	26.03493946215965	28.0	26.0	28.0	24.5	29.0
+92-93	25.833215729758187	28.0	26.0	28.0	24.0	29.0
+94-95	25.503102494315826	27.5	26.0	28.0	22.5	29.0
+96-97	24.52807178671565	27.0	25.5	27.5	21.0	28.0
+98-99	23.202399486277717	26.0	24.5	26.5	10.0	27.0
+100-101	23.72906749698524	27.0	26.0	28.0	2.0	29.0
+>>END_MODULE
+>>Per tile sequence quality	pass
+#Tile	Base	Mean
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[phone]	-0.5674666924173444
[phone]	-0.677027788148628
+>>END_MODULE
+>>Per sequence quality scores	warn
+#Quality	Count
+2	91.0
+3	0.0
+4	0.0
+5	0.0
+6	1.0
+7	4.0
+8	1.0
+9	4.0
+10	19.0
+11	20.0
+12	36.0
+13	57.0
+14	112.0
+15	185.0
+16	315.0
+17	488.0
+18	667.0
+19	878.0
+20	1127.0
+21	1933.0
+22	2846.0
+23	4426.0
+24	7254.0
+25	15604.0
+26	147526.0
+27	84255.0
+>>END_MODULE
+>>Per base sequence content	fail
+#Base	G	A	T	C
+1	24.561095571182623	12.690042536664064	10.404490437653351	52.344371454499964
+2	18.339437518900574	21.261606352833127	40.84540170021169	19.55355442805461
+3	24.3623968130108	22.75060764115756	24.606199993279546	28.28079555255209
+4	24.70272429615194	30.13376939992309	20.251335640603475	24.912170663321497
+5	26.912278605776415	30.437785609748815	22.448552910606015	20.201382873868763
+6	21.71820690015643	32.44626636649754	23.826857669806493	22.008669063539532
+7	20.05719640543739	18.11617739845958	38.19876124234177	23.62786495376126
+8	20.67097506430862	21.73762082367304	30.101661757184083	27.489742354834252
+9	21.03797288770912	20.6063864341476	32.13340352213374	26.22223715600954
+10-11	24.92953119108154	29.215714824397327	22.228755754174927	23.6259982303462
+12-13	23.055154210021318	24.05403790941911	27.701242117760376	25.189565762799187
+14-15	23.740988392713806	25.209166358657303	26.766200359157583	24.283644889471308
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+18-19	24.04209087956274	25.55880365429776	25.791957408838563	24.607148057300943
+20-21	23.93419426617236	25.75256954478083	26.05945887421644	24.253777314830373
+22-23	24.163987918566058	25.89910733286292	25.740809187265963	24.196095561305064
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+26-27	23.946327968370237	26.093246568029	25.94857550336197	24.01184996023879
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+42-43	23.894806402114625	25.829665221822744	26.05553875504482	24.219989621017813
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+46-47	24.046010998734364	25.874839928467157	25.88977371578763	24.189375357010853
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+52-53	23.98758255584303	26.181169240878255	25.754062923512876	24.07718527976584
+54-55	24.002329670821993	25.763956557612683	26.049005223092113	24.184708548473207
+56-57	24.145694029098486	25.93812185223764	26.200956509077876	23.715227609585998
+58-59	24.10443944162569	26.029031282550992	25.90638755418165	23.96014172164167
+60-61	23.907500121337023	25.956415741705214	26.048818550750607	24.087265586207156
+62-63	23.989262606916583	25.956975758729733	26.25397145406554	23.799790180288145
+64-65	24.19852230174464	25.83377201333587	25.889960388129136	24.077745296790358
+66-67	23.939421091734523	25.92654816706428	26.010737393083417	24.123293348117784
+68-69	23.959021687592635	25.83750546016599	26.237170943330014	23.966301908911365
+70-71	23.97992898984129	26.19087620263656	25.813424728111734	24.015770079410416
+72-73	23.799976852629655	26.096606670176108	26.129087657598127	23.974328819596117
+74-75	24.05739801156622	26.019324320792688	26.18191593024428	23.741361737396815
+76-77	24.116013126799054	25.837318787824483	26.0995934276402	23.947074657736263
+78-79	24.028463798632814	26.152981717310876	25.835452064409424	23.98310241964689
+80-81	24.037984088049612	25.988336712102715	26.165115419508755	23.808563780338922
+82-83	24.09286575645233	25.723635331847422	26.134501155501795	24.048997756198457
+84-85	23.749388648081567	25.817531519624865	26.270771964801064	24.162307867492505
+86-87	23.906566759629495	26.199276458004324	26.24613121572229	23.648025566643895
+88-89	24.194788854914524	25.881373460419866	25.988710056785724	23.935127627879886
+90-91	24.30641891513502	25.716915127553207	25.838438821873517	24.13822713543825
+92-93	23.89331302338258	26.09231320632147	26.2431444582582	23.771229312037754
+94-95	24.343006694070166	25.78803728966694	25.850945868754412	24.018010147508484
+96-97	24.293351851229612	25.853745953877	25.936815145847103	23.916087049046293
+98-99	24.295965264010693	25.91702787764748	26.050311929482657	23.73669492885917
+100-101	24.65138940223783	25.744542634096078	25.755742974586425	23.848324989079668
+>>END_MODULE
+>>Per sequence GC content	pass
+#GC Content	Count
+0	0.0
+1	0.0
+2	0.0
+3	0.0
+4	0.0
+5	0.0
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10	0.0
+11	0.0
+12	0.0
+13	0.0
+14	0.5
+15	2.0
+16	5.0
+17	7.5
+18	10.5
+19	15.5
+20	20.0
+21	28.5
+22	42.5
+23	63.0
+24	126.5
+25	228.0
+26	385.0
+27	545.0
+28	720.0
+29	1080.5
+30	1474.5
+31	1743.5
+32	2015.0
+33	2324.0
+34	2747.0
+35	3375.5
+36	3996.5
+37	4590.5
+38	5365.0
+39	6219.5
+40	7284.0
+41	8648.0
+42	9680.5
+43	10325.5
+44	10906.0
+45	11123.5
+46	11325.5
+47	12122.5
+48	12960.5
+49	13030.0
+50	12518.5
+51	11744.0
+52	10781.0
+53	10248.5
+54	10433.5
+55	9922.0
+56	8785.5
+57	7997.0
+58	6901.0
+59	5796.0
+60	4967.0
+61	4072.5
+62	3639.5
+63	3267.0
+64	2561.5
+65	2002.5
+66	1561.5
+67	1355.5
+68	1222.0
+69	1019.0
+70	803.0
+71	568.5
+72	371.5
+73	235.0
+74	164.5
+75	110.5
+76	70.5
+77	56.0
+78	39.5
+79	27.0
+80	18.0
+81	17.0
+82	15.5
+83	12.5
+84	6.5
+85	1.5
+86	0.0
+87	0.0
+88	0.0
+89	0.0
+90	0.0
+91	0.0
+92	0.0
+93	0.0
+94	0.0
+95	0.0
+96	0.0
+97	0.0
+98	0.0
+99	0.0
+100	0.0
+>>END_MODULE
+>>Per base N content	pass
+#Base	N-Count
+1	0.029867574640935753
+2	0.0
+3	0.003733446830116969
+4	0.0
+5	3.733446830116969E-4
+6	0.0
+7	0.0
+8	0.0
+9	0.0
+10-11	0.0
+12-13	0.0
+14-15	0.0
+16-17	0.0
+18-19	0.0
+20-21	0.0
+22-23	0.0
+24-25	0.0
+26-27	0.0
+28-29	0.0
+30-31	0.0
+32-33	0.0
+34-35	0.0
+36-37	0.0
+38-39	0.0
+40-41	0.0
+42-43	0.0
+44-45	0.0
+46-47	0.0
+48-49	0.0
+50-51	0.0
+52-53	0.0
+54-55	0.0
+56-57	0.0
+58-59	0.0
+60-61	0.0
+62-63	0.0
+64-65	0.0
+66-67	0.0
+68-69	0.0
+70-71	0.0
+72-73	0.0
+74-75	0.0
+76-77	0.0
+78-79	0.0
+80-81	0.0
+82-83	0.0
+84-85	0.0
+86-87	0.0
+88-89	0.0
+90-91	0.0
+92-93	0.0
+94-95	0.0
+96-97	0.0
+98-99	0.0
+100-101	0.0
+>>END_MODULE
+>>Sequence Length Distribution	pass
+#Length	Count
+101	267849.0
+>>END_MODULE
+>>Sequence Duplication Levels	warn
+#Total Deduplicated Percentage	63.69408840068983
+#Duplication Level	Percentage of deduplicated	Percentage of total
+1	81.5623716290639	51.950409087115126
+2	9.995611185249079	12.733226849043577
+3	3.1947144335386772	6.104532706343167
+4	1.4905270052149588	3.797510353351082
+5	0.8725392208870194	2.778779513412342
+6	0.55360835935223	2.115694786796508
+7	0.38537193434967776	1.718213983752925
+8	0.314619574221819	1.603152557845755
+9	0.2033036957962869	1.1654319215012086
+>10	1.4223398099582591	15.850860027094066
+>50	0.0049931523680946535	0.18218821374420768
+>100	0.0	0.0
+>500	0.0	0.0
+>1k	0.0	0.0
+>5k	0.0	0.0
+>10k+	0.0	0.0
+>>END_MODULE
+>>Overrepresented sequences	pass
+>>END_MODULE
+>>Adapter Content	pass
+#Position	Illumina Universal Adapter	Illumina Small RNA Adapter	Nextera Transposase Sequence	SOLID Small RNA Adapter
+1	0.0	0.0	0.0	0.0
+2	0.0	0.0	0.0	0.0
+3	0.0	0.0	0.0	0.0
+4	0.0	0.0	0.0	0.0
+5	0.0	0.0	0.0	0.0
+6	0.0	0.0	0.0	0.0
+7	0.0	0.0	0.0	0.0
+8	0.0	0.0	0.0	0.0
+9	0.0	0.0	0.0	0.0
+10-11	0.0	0.0	0.0	0.0
+12-13	0.0	0.0	0.0	0.0
+14-15	0.0	0.0	0.0	0.0
+16-17	0.0	0.0	0.0	0.0
+18-19	0.0	0.0	0.0	0.0
+20-21	0.0	0.0	0.0	0.0
+22-23	0.0	0.0	0.0	0.0
+24-25	0.0	0.0	0.0	0.0
+26-27	0.0	0.0	0.0	0.0
+28-29	0.0	0.0	0.0	0.0
+30-31	0.0	0.0	0.0	0.0
+32-33	0.0	0.0	0.0	0.0
+34-35	0.0	0.0	0.0	0.0
+36-37	0.0	0.0	0.0	0.0
+38-39	0.0	0.0	0.0	0.0
+40-41	0.0	0.0	0.0	0.0
+42-43	0.0	0.0	0.0	0.0
+44-45	0.0	0.0	0.0	0.0
+46-47	0.0	0.0	0.0	0.0
+48-49	0.0	0.0	0.0	0.0
+50-51	0.0	0.0	0.0	0.0
+52-53	0.0	0.0	0.0	0.0
+54-55	0.0	0.0	0.0	0.0
+56-57	0.0	0.0	0.0	0.0
+58-59	0.0	0.0	0.0	0.0
+60-61	0.0	0.0	0.0	0.0
+62-63	0.0	0.0	0.0	0.0
+64-65	0.0	0.0	0.0	0.0
+66-67	0.0	0.0	0.0	0.0
+68-69	0.0	0.0	0.0	0.0
+70-71	0.0	0.0	0.0	0.0
+72-73	0.0	0.0	0.0	0.0
+74-75	0.0	0.0	0.0	0.0
+76-77	0.0	0.0	0.0	0.0
+78-79	0.0	0.0	0.0	0.0
+80-81	0.0	0.0	0.0	0.0
+82-83	0.0	0.0	0.0	0.0
+84-85	0.0	0.0	0.0	0.0
+86-87	0.0	0.0	0.0	0.0
+88-89	0.0	0.0	0.0	0.0
+>>END_MODULE
+>>Kmer Content	warn
+#Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
+TTAGTGG	50	0.0016122013	38.00672	3
+CCGGGAA	65	0.0058204937	29.246862	1
+CTCGCCA	65	0.0058204937	29.246862	1
+CCCGCTT	70	0.008357804	27.157803	1
+AACAATT	125	0.006013185	19.00336	2
+CTGGGAT	205	3.3062082E-4	16.228443	1
+AGTTCAA	195	0.0044498937	14.615241	5
+GAGTAGT	125	0.0014974214	13.29987	30-31
+AAGTTCA	220	0.009890434	12.954418	4
+CTGAAAT	275	0.003044474	12.097567	1
+CCCAGCT	405	3.2130985E-5	11.734852	1
+AGGGTGT	145	0.0045575905	11.465405	66-67
+CTGAATT	335	0.001024679	11.349529	1
+CTTGAAT	295	0.0051441877	11.277392	1
+GAATGTC	425	6.555659E-4	10.058724	4
+GGTAGTA	190	0.002949709	9.999902	52-53
+CTCTGCC	390	0.0036302158	9.748955	1
+CTCCTTT	535	5.356131E-4	8.883393	1
+CTTTGCT	500	0.0028739348	8.5547085	1
+>>END_MODULE