Mercurial > repos > iuc > multiqc
diff test-data/flexbar.txt @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
| author | iuc |
|---|---|
| date | Tue, 24 Oct 2017 06:29:59 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/flexbar.txt Tue Oct 24 06:29:59 2017 -0400 @@ -0,0 +1,71 @@ + + ________ __ + / ____/ /__ _ __/ /_ ____ ______ + / /_ / / _ \| |/ / __ \/ __ `/ ___/ + / __/ / / __/> </ /_/ / /_/ / / + /_/ /_/\___/_/|_/_.___/\__._/_/ + +Flexbar - flexible barcode and adapter removal, version 3.0 +Developed with SeqAn, the library for sequence analysis + +Available on github.com/seqan/flexbar + + +Local time: Mon Jun 5 13:20:34 2017 + +Number of threads: 1 +Bundled fragments: 256 + +Target name: result_right +File type: fasta +Reads file: reads.fasta +Adapter file: adapters.fasta + +max-uncalled: 0 +min-read-length: 10 + +adapter-trim-end: RIGHT +adapter-min-overlap: 4 +adapter-error-rate: 0.1 +adapter-match: 1 +adapter-mismatch: -1 +adapter-gap: -6 + +Adapter: Sequence: +ad1 CGTCTT + + +Processing reads ...done. + +Elapsed time: < 1 sec + + +Adapter removal statistics +========================== +Adapter: Overlap removal: Full length: +ad1 11 10 + +Min, max, mean and median overlap: 5 / 6 / 5 / 6 + + +Output file statistics +====================== +Read file: result_right.fasta + written reads 10 + short reads 3 + + +Filtering statistics +==================== +Processed reads 13 + skipped due to uncalled bases 0 + short prior to adapter removal 0 + finally skipped short reads 3 +Discarded reads overall 3 +Remaining reads 10 (76%) + +Processed bases 422 +Remaining bases 231 (54% of input) + + +Flexbar completed adapter removal.