diff test-data/samtools_flagstat_stats.tabular @ 0:3bad335ccea9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author iuc
date Tue, 24 Oct 2017 06:29:59 -0400
parents
children e0f4a651c6b9
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_flagstat_stats.tabular	Tue Oct 24 06:29:59 2017 -0400
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+Sample	mapped_passed	duplicates_failed	secondary_passed	paired in sequencing_failed	duplicates_passed	read2_passed	read1_failed	read1_passed	with mate mapped to a different chr_passed	total_failed	properly paired_passed_pct	singletons_passed	supplementary_passed	singletons_passed_pct	mapped_failed_pct	mapped_passed_pct	supplementary_failed	with itself and mate mapped_failed	mapped_failed	total_passed	properly paired_failed	flagstat_total	with mate mapped to a different chr (mapQ >= 5)_passed	properly paired_failed_pct	with mate mapped to a different chr (mapQ >= 5)_failed	with itself and mate mapped_passed	read2_failed	with mate mapped to a different chr_failed	properly paired_passed	paired in sequencing_passed	singletons_failed	secondary_failed	singletons_failed_pct
+samtools_flagstat	20689039	0	0	0	5448463	0	0	0	0	0	nan	0	0	nan	nan	98.33	0	0	0	21040602	0	21040602	0	nan	0	0	0	0	0	0	0	0	nan