Mercurial > repos > iuc > multiqc
view test-data/fastp1.json.txt @ 12:1c2db0054039 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 761a954744119f6317afe28eb50bd4f3fdea4984
| author | iuc |
|---|---|
| date | Wed, 08 Aug 2018 08:49:39 -0400 |
| parents | |
| children |
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{ "summary": { "before_filtering": { "total_reads":2, "total_bases":302, "q20_bases":262, "q30_bases":241, "q20_rate":0.86755, "q30_rate":0.798013, "read1_mean_length":151, "gc_content":0.36755 }, "after_filtering": { "total_reads":2, "total_bases":286, "q20_bases":246, "q30_bases":226, "q20_rate":0.86014, "q30_rate":0.79021, "read1_mean_length":143, "gc_content":0.367133 } }, "filtering_result": { "passed_filter_reads": 2, "low_quality_reads": 0, "too_many_N_reads": 0, "too_short_reads": 0, "too_long_reads": 0 }, "duplication": { "rate": 0, "histogram": [2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "mean_gc": [0.407843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0] }, "read1_before_filtering": { "total_reads": 2, "total_bases": 302, "q20_bases": 262, "q30_bases": 241, "total_cycles": 151, "quality_curves": { 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"GGAAT":1, "GGAAC":1, "GGAAG":1, "GGATA":0, "GGATT":1, "GGATC":0, "GGATG":0, "GGACA":0, "GGACT":0, "GGACC":0, "GGACG":0, "GGAGA":1, "GGAGT":1, "GGAGC":1, "GGAGG":1, "GGTAA":2, "GGTAT":1, "GGTAC":1, "GGTAG":0, "GGTTA":0, "GGTTT":0, "GGTTC":0, "GGTTG":0, "GGTCA":0, "GGTCT":0, "GGTCC":0, "GGTCG":1, "GGTGA":0, "GGTGT":0, "GGTGC":0, "GGTGG":0, "GGCAA":0, "GGCAT":0, "GGCAC":0, "GGCAG":2, "GGCTA":0, "GGCTT":0, "GGCTC":0, "GGCTG":0, "GGCCA":0, "GGCCT":0, "GGCCC":0, "GGCCG":0, "GGCGA":0, "GGCGT":0, "GGCGC":0, "GGCGG":0, "GGGAA":2, "GGGAT":0, "GGGAC":0, "GGGAG":0, "GGGTA":1, "GGGTT":0, "GGGTC":0, "GGGTG":0, "GGGCA":0, "GGGCT":0, "GGGCC":0, "GGGCG":0, "GGGGA":0, "GGGGT":1, "GGGGC":0, "GGGGG":0 }, "overrepresented_sequences": { } }, "command": "fastp --thread 1 --report_title fastp report for R1_fq.fastq -i R1_fq.fastq -o first.fastq -U --umi_loc read1 --umi_len 8 " }