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view test-data/hicexplorer1.log @ 23:abfd8a6544d7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author iuc
date Sat, 10 Dec 2022 11:22:18 +0000
parents 01237d721a9f
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File	small_test_matrix.h5		
Pairs considered	99983		
Min rest. site distance	303		
Max rest. site distance	800		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	52726	(52.73)
Pairs used	37321	(37.33)
One mate unmapped	8777	(8.78)
One mate not unique	3603	(3.60)
One mate low quality	34877	(34.88)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end	0	(0.00)
self ligation (removed)	0	(0.00)
One mate not close to rest site	0	(0.00)
same fragment (800 bp)	15393	(29.19)
self circle	0	(0.00)
duplicated pairs	12	(0.02)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	5955	(15.96)
short range < 20kb	8853	(23.72)
long range	22513	(60.32)
inward pairs	7145	(19.14)
outward pairs	9731	(26.07)
left pairs	7156	(19.17)
right pairs	7334	(19.65)