Mercurial > repos > iuc > multiqc
view test-data/pycoqc.json @ 23:abfd8a6544d7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 8a91236cee4d408ae2b53a3e9b6daebc332d631a
author | iuc |
---|---|
date | Sat, 10 Dec 2022 11:22:18 +0000 |
parents | 75c93c70d094 |
children |
line wrap: on
line source
{ "pycoqc": { "version": "2.5.2", "date": "02/03/21" }, "All Reads": { "run": { "run_duration": 0.07199815538194444, "active_channels": 375, "runid_number": 1, "barcodes_number": 0 }, "basecall": { "reads_number": 1000, "bases_number": 3233722, "N50": 7421, "len_percentiles": [ 5.0, 196.89, 225.82000000000002, 239.97, 257.96000000000004, 273.0, 281.94, 297.86, 305.0, 317.82, 327.9, 336.0, 342.88, 350.87, 362.86, 370.84999999999997, 379.68, 385.0, 395.0, 406.81, 422.40000000000003, 435.58, 447.0, 459.31000000000006, 475.0, 491.5, 509.74, 520.6500000000001, 541.0, 557.0, 582.7, 603.8299999999999, 625.72, 661.3600000000001, 688.6600000000001, 703.6500000000001, 727.0, 759.52, 789.86, 843.83, 870.8000000000001, 906.1300000000002, 939.3199999999999, 974.71, 1019.56, 1050.3, 1097.3200000000002, 1147.4800000000005, 1197.12, 1240.02, 1292.5, 1364.49, 1419.4, 1479.3500000000001, 1509.46, 1549.45, 1603.800000000001, 1690.1500000000003, 1780.6199999999994, 1862.0999999999997, 1944.8, 2013.8999999999999, 2113.0, 2167.2200000000003, 2282.4800000000005, 2389.2000000000003, 2502.0600000000004, 2604.2900000000004, 2722.5200000000004, 2894.62, 2984.3000000000006, 3103.58, 3280.08, 3553.0499999999997, 3663.56, 3842.25, 4041.2, 4228.960000000001, 4498.4400000000005, 4850.42, 4874.0, 4918.1900000000005, 4949.800000000001, 5078.700000000001, 5421.599999999999, 5615.249999999999, 6032.899999999998, 6540.2, 7015.48, 7310.22, 8010.3, 9004.53, 9645.08, 10920.21, 11849.000000000013, 12462.050000000007, 12839.880000000001, 13407.479999999996, 18027.78, 27456.589999999982, 63182.0 ], "qual_score_percentiles": [ 1.0, 1.9042248058319091, 3.7342360925674436, 4.2765934896469116, 4.662521381378173, 5.039691400527953, 5.537737865447998, 6.137966737747192, 7.193753776550293, 7.567598361968994, 8.053880548477172, 8.30654149055481, 8.56398983001709, 8.716497030258179, 8.850732097625732, 8.98436131477356, 9.194853210449219, 9.363082151412964, 9.537731952667237, 9.686720247268676, 9.79648895263672, 9.878579769134522, 9.934941310882568, 10.016808042526245, 10.08527530670166, 10.16098928451538, 10.214599704742431, 10.29961688041687, 10.350638275146485, 10.399478530883789, 10.449283027648924, 10.54677218437195, 10.594075813293458, 10.649061031341553, 10.690234031677246, 10.741025161743163, 10.770295219421387, 10.800744934082031, 10.84002004623413, 10.870865812301634, 10.918336296081543, 10.968367967605591, 11.028993320465087, 11.071406173706055, 11.12955696105957, 11.168383646011353, 11.193472747802733, 11.232793817520143, 11.250091361999512, 11.292527294158937, 11.340101718902588, 11.382259531021118, 11.42140998840332, 11.463120250701905, 11.507589550018311, 11.533913135528564, 11.549580116271972, 11.592965545654296, 11.629672355651856, 11.665341758728026, 11.694609069824219, 11.720635719299317, 11.758737945556641, 11.786592025756836, 11.828854484558107, 11.856536817550658, 11.898454780578612, 11.936411895751954, 11.988162803649903, 12.028224782943726, 12.053550910949706, 12.094029130935668, 12.12485668182373, 12.141902112960816, 12.171291179656983, 12.210267543792725, 12.254249076843262, 12.299221143722534, 12.35698434829712, 12.390463581085205, 12.423693656921387, 12.476593885421753, 12.510243854522704, 12.553100719451905, 12.606478996276854, 12.642082834243775, 12.693352222442627, 12.721990079879761, 12.786267166137694, 12.824270009994507, 12.860717964172364, 12.936282300949097, 12.992064361572266, 13.046931791305543, 13.113661613464355, 13.16291012763977, 13.226237106323243, 13.295761280059814, 13.452823905944825, 13.607751712799072, 14.650373458862305 ], "len_hist": { "x": [ 5.513287554226527, 6.079267931117825, 6.703350444688072, 7.391499715663519, 8.150292677887318, 8.98698143685995, 9.909562581180959, 10.926853609330772, 12.048577202235712, 13.285454147044726, 14.649305800229781, 16.153167069293065, 17.811410992895045, 19.63988611006836, 21.65606793141327, 23.87922595994899, 26.330607857909968, 29.033642519646833, 32.014163991486186, 35.300658378645586, 38.924536098997805, 42.92043208572916, 47.3265368080551, 52.18496127369875, 57.54213950161535, 63.449272311564485, 69.96281667201563, 77.14502528329123, 85.06454155297203, 93.79705564999716, 103.42602790764452, 114.04348648926036, 125.75090694036813, 138.6601820334059, 152.89469117431224, 168.59047959172892, 185.89755857883202, 204.98133921475417, 226.02421326827817, 249.227296393168, 274.812350275596, 303.0239021044367, 334.13158162110955, 368.4326980851379, 406.2550817845779, 447.9602172488385, 493.9466981093268, 544.6540366274876, 600.5668642995131, 662.2195636846718, 730.2013757256042, 805.1620313734129, 887.8179613413567, 978.9591433364137, 1079.4566522105831, 1190.2709851919278, 1312.46124176312, 1447.1952459234615, 1595.760707577123, 1759.577529721733, 1940.2113790622989, 2139.388649750571, 2359.012963264665, 2601.183362125222, 2868.2143713332193, 3162.6581192650224, 3487.328729443463, 3845.329216307453, 4240.081142034303, 4675.3573178576635, 5155.317862421318, 5684.5499617938285, 6268.111711147357, 6911.580457114057, 7621.106102848441, 8403.469885254826, 9266.149186138577, 10217.388996708822, 11266.280718449168, 12422.849053489603, 13698.147814927812, 15104.36557279937, 16654.942145400455, 18364.69704931985, 20249.971135831165, 22328.782767324843, 24621.000026423975, 27148.530603658877, 29935.531178538055, 33008.638295158824, 36397.22293893288, 40133.67124752532, 44253.6940388801, 48796.668114621294, 53806.012600812726, 59329.603922923336, 65420.233381088554, 72136.11169890997, 79541.42536797903 ], "y": [ 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 1.0, 3.0, 6.0, 9.0, 14.0, 19.0, 24.0, 29.0, 32.0, 33.0, 33.0, 31.0, 29.0, 27.0, 26.0, 25.0, 24.0, 24.0, 24.0, 24.0, 24.0, 24.0, 24.0, 24.0, 23.0, 23.0, 22.0, 22.0, 21.0, 21.0, 20.0, 20.0, 21.0, 22.0, 23.0, 22.0, 21.0, 18.0, 16.0, 14.0, 12.0, 11.0, 11.0, 11.0, 11.0, 10.0, 8.0, 6.0, 4.0, 3.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 ] }, "qual_score_hist": { "x": [ 1.1378825601905282, 1.2757651203810567, 1.413647680571585, 1.5515302407621134, 1.6894128009526417, 1.82729536114317, 1.9651779213336984, 2.103060481524227, 2.240943041714755, 2.3788256019052834, 2.516708162095812, 2.65459072228634, 2.7924732824768683, 2.930355842667397, 3.068238402857925, 3.2061209630484533, 3.3440035232389818, 3.48188608342951, 3.6197686436200383, 3.7576512038105667, 3.8955337640010947, 4.033416324191624, 4.171298884382152, 4.30918144457268, 4.447064004763208, 4.584946564953737, 4.722829125144266, 4.860711685334794, 4.998594245525322, 5.13647680571585, 5.2743593659063785, 5.412241926096907, 5.550124486287435, 5.6880070464779635, 5.8258896066684915, 5.96377216685902, 6.1016547270495485, 6.2395372872400765, 6.3774198474306045, 6.515302407621133, 6.6531849678116615, 6.7910675280021895, 6.928950088192718, 7.066832648383246, 7.2047152085737745, 7.342597768764303, 7.480480328954831, 7.618362889145359, 7.756245449335888, 7.894128009526416, 8.032010569716945, 8.169893129907473, 8.307775690098001, 8.445658250288531, 8.583540810479057, 8.721423370669587, 8.859305930860115, 8.997188491050643, 9.135071051241171, 9.2729536114317, 9.410836171622227, 9.548718731812757, 9.686601292003285, 9.824483852193813, 9.962366412384341, 10.10024897257487, 10.238131532765399, 10.376014092955927, 10.513896653146455, 10.651779213336983, 10.789661773527511, 10.92754433371804, 11.065426893908569, 11.203309454099097, 11.341192014289625, 11.479074574480153, 11.616957134670681, 11.754839694861209, 11.892722255051739, 12.030604815242267, 12.168487375432795, 12.306369935623323, 12.444252495813851, 12.582135056004379, 12.720017616194909, 12.857900176385437, 12.995782736575965, 13.133665296766493, 13.27154785695702, 13.409430417147549, 13.547312977338079, 13.685195537528607, 13.823078097719135, 13.960960657909663, 14.09884321810019, 14.236725778290719, 14.374608338481249, 14.512490898671777, 14.650373458862305 ], "y": [ 3.0, 2.0, 1.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 2.0, 2.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 3.0, 2.0, 2.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 2.0, 2.0, 2.0, 2.0, 3.0, 3.0, 3.0, 3.0, 4.0, 5.0, 6.0, 7.0, 7.0, 8.0, 8.0, 8.0, 8.0, 8.0, 9.0, 11.0, 13.0, 16.0, 18.0, 20.0, 22.0, 24.0, 26.0, 29.0, 31.0, 32.0, 33.0, 35.0, 36.0, 38.0, 38.0, 38.0, 38.0, 37.0, 35.0, 33.0, 32.0, 29.0, 27.0, 24.0, 21.0, 17.0, 14.0, 10.0, 7.0, 4.0, 3.0, 2.0, 1.0, 1.0, 0.0, 0.0 ] } } }, "Pass Reads": { "run": { "run_duration": 0.07199815538194444, "active_channels": 351, "runid_number": 1, "barcodes_number": 0 }, "basecall": { "reads_number": 922, "bases_number": 3088082, "N50": 7753, "len_percentiles": [ 197.0, 233.84, 248.68, 268.0, 279.0, 292.0, 301.52, 311.4100000000001, 320.68, 328.89, 340.0, 345.31, 358.52, 366.46, 372.8800000000001, 380.3, 385.36, 395.0, 406.78000000000003, 423.0, 436.20000000000005, 447.0, 457.0, 470.49, 486.03999999999996, 509.0, 517.0, 532.6700000000001, 551.8800000000001, 561.6299999999999, 588.8000000000001, 612.53, 630.0, 672.8600000000001, 692.0, 718.7, 745.0, 774.0799999999999, 812.7600000000002, 849.76, 880.8000000000004, 919.61, 954.56, 1006.1199999999999, 1042.72, 1087.9, 1125.0, 1185.87, 1238.08, 1265.87, 1358.5, 1407.2000000000007, 1466.92, 1496.0400000000004, 1529.0400000000002, 1562.2000000000003, 1631.5200000000002, 1739.97, 1819.6199999999994, 1932.78, 1963.6000000000004, 2071.9099999999994, 2148.02, 2256.23, 2366.0000000000014, 2482.6, 2567.6400000000003, 2700.400000000001, 2894.5600000000004, 2997.17, 3143.5000000000027, 3338.46, 3611.5200000000004, 3791.9699999999993, 3894.62, 4086.25, 4391.960000000001, 4534.950000000003, 4852.76, 4874.0, 4917.8, 4943.050000000001, 5016.4400000000005, 5359.15, 5515.92, 5845.400000000001, 6393.360000000001, 6822.07, 7142.040000000001, 7550.720000000005, 8270.3, 9181.380000000001, 9833.720000000001, 11060.810000000007, 12277.48, 12654.750000000002, 12879.119999999999, 14047.660000000002, 18164.58, 28828.609999999935, 63182.0 ], "qual_score_percentiles": [ 7.0692877769470215, 7.444508814811706, 7.897559633255005, 8.184709339141847, 8.513405113220214, 8.62751817703247, 8.751153678894044, 8.893055315017701, 9.005527420043945, 9.201985416412354, 9.366088390350342, 9.52314024925232, 9.680536689758302, 9.772556848526001, 9.856123733520507, 9.922088861465454, 9.975081672668457, 10.068719081878662, 10.112640056610108, 10.173688268661499, 10.22991714477539, 10.321753368377685, 10.35428077697754, 10.401282119750977, 10.448671226501464, 10.535621404647827, 10.586209182739257, 10.629361972808837, 10.677044944763182, 10.710721940994262, 10.750213241577148, 10.783537979125978, 10.809871826171875, 10.851340770721436, 10.874047584533692, 10.920793056488037, 10.968230667114257, 11.025596694946287, 11.069157981872559, 11.124534521102905, 11.15766010284424, 11.180776538848878, 11.211617527008057, 11.239876594543457, 11.266540565490722, 11.304627990722656, 11.350833740234375, 11.389151763916015, 11.425089530944824, 11.462163410186768, 11.504599571228027, 11.531198501586914, 11.541756134033204, 11.584997014999391, 11.610410976409913, 11.643586015701295, 11.67805564880371, 11.702510213851928, 11.735319080352783, 11.764061088562013, 11.791617584228515, 11.829979724884033, 11.856443347930908, 11.898215818405152, 11.926767807006836, 11.963513898849488, 12.016698112487793, 12.045222425460814, 12.072426719665529, 12.103458290100097, 12.13003454208374, 12.146661567687989, 12.17845199584961, 12.21238962173462, 12.25685317993164, 12.29717755317688, 12.34505039215088, 12.378822164535523, 12.413372917175293, 12.467195682525634, 12.49202995300293, 12.52562738418579, 12.573710613250732, 12.6148228931427, 12.662013778686525, 12.697950077056886, 12.727695446014403, 12.786603193283081, 12.823188095092775, 12.858209800720214, 12.89704351425171, 12.975003461837769, 13.018280601501464, 13.085221252441407, 13.143034152984619, 13.18202576637268, 13.246635093688964, 13.333292961120605, 13.467570629119871, 13.675953807830806, 14.650373458862305 ], "len_hist": { "x": [ 209.31036872369256, 222.3900023109043, 236.28697149318896, 251.05235090276128, 266.74040678379095, 283.4087964336195, 301.1187801068976, 319.93544616143777, 339.9279502732469, 361.1697695999104, 383.7389728264379, 407.7185070860547, 433.19650281043437, 460.2665976297774, 489.0282805131379, 519.5872574137983, 552.0558397635243, 586.5533572435072, 623.2065963490268, 662.150266359656, 703.5274944275678, 747.4903516035015, 794.2004117336626, 843.8293452816314, 896.5595502577166, 952.584822574572, 1012.1110682927763, 1075.3570603740682, 1142.5552427234638, 1213.9525844753111, 1289.8114876629793, 1370.4107516080833, 1456.0465975736072, 1547.0337574467499, 1643.7066304526845, 1746.4205121504046, 1855.5529002275189, 1971.504881893092, 2094.7026079675265, 2225.598859087126, 2364.674709779469, 2512.4412965255406, 2669.441696306564, 2836.252922539728, 3013.48804573828, 3201.7984466899416, 3401.876210434612, 3614.4566698397257, 3840.3211081216396, 4080.2996302452793, 4335.274213755259, 4606.181950250912, 4894.018489418451, 5199.841698277899, 5524.775549093288, 5870.0142502353165, 6236.826635178091, 6626.560825760777, 7040.6491868526155, 7480.613590630892, 7948.071009819389, 8444.739460443585, 8972.444315943978, 9533.125015852962, 10128.842193691571, 10761.785250282639, 11434.280400313977, 12148.799221724934, 12907.967739336818, 13714.57607611226, 14571.58870751367, 15482.155356648145, 16449.62257024118, 17477.54601798352, 18569.703560454007, 19730.10913364615, 20963.027501127788, 22272.989928050563, 23664.81083461599, 25143.605490202604, 26714.80881318464, 28384.19534553616, 30157.900475631912, 32042.442987243314, 34044.74901760306, 36172.177512589216, 38432.54727258326, 40834.16568840172, 43385.85927291225, 46097.00610054573, 48977.57027392661, 52038.1385442951, 55289.95922030962, 58744.98350822815, 62415.90943540348, 66316.2285185223, 70460.2753481043, 74863.28027149545, 79541.42536797903 ], "y": [ 4.0, 4.0, 6.0, 8.0, 10.0, 12.0, 14.0, 17.0, 19.0, 21.0, 21.0, 21.0, 21.0, 20.0, 19.0, 18.0, 17.0, 16.0, 15.0, 14.0, 14.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 13.0, 14.0, 14.0, 14.0, 14.0, 14.0, 13.0, 13.0, 12.0, 12.0, 12.0, 12.0, 12.0, 11.0, 11.0, 10.0, 10.0, 10.0, 10.0, 11.0, 12.0, 13.0, 14.0, 16.0, 16.0, 14.0, 12.0, 10.0, 9.0, 8.0, 8.0, 7.0, 6.0, 6.0, 6.0, 6.0, 6.0, 7.0, 8.0, 8.0, 7.0, 5.0, 3.0, 2.0, 2.0, 2.0, 1.0, 1.0, 1.0, 0.0, 0.0, 1.0, 1.0, 1.0, 1.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 ] }, "qual_score_hist": { "x": [ 7.145864399996671, 7.22244102304632, 7.29901764609597, 7.375594269145619, 7.452170892195268, 7.528747515244917, 7.605324138294566, 7.681900761344216, 7.758477384393865, 7.835054007443515, 7.911630630493164, 7.9882072535428135, 8.064783876592463, 8.141360499642111, 8.217937122691762, 8.29451374574141, 8.37109036879106, 8.447666991840709, 8.52424361489036, 8.600820237940008, 8.677396860989656, 8.753973484039307, 8.830550107088955, 8.907126730138605, 8.983703353188254, 9.060279976237904, 9.136856599287553, 9.213433222337203, 9.290009845386852, 9.366586468436502, 9.44316309148615, 9.519739714535799, 9.59631633758545, 9.6728929606351, 9.749469583684748, 9.826046206734397, 9.902622829784047, 9.979199452833695, 10.055776075883346, 10.132352698932994, 10.208929321982644, 10.285505945032293, 10.362082568081942, 10.438659191131592, 10.515235814181242, 10.59181243723089, 10.66838906028054, 10.74496568333019, 10.821542306379838, 10.898118929429488, 10.974695552479137, 11.051272175528787, 11.127848798578436, 11.204425421628084, 11.281002044677734, 11.357578667727385, 11.434155290777033, 11.510731913826682, 11.587308536876332, 11.66388515992598, 11.740461782975629, 11.81703840602528, 11.89361502907493, 11.970191652124578, 12.046768275174227, 12.123344898223877, 12.199921521273527, 12.276498144323176, 12.353074767372824, 12.429651390422475, 12.506228013472123, 12.582804636521772, 12.659381259571422, 12.735957882621072, 12.81253450567072, 12.88911112872037, 12.96568775177002, 13.04226437481967, 13.118840997869318, 13.195417620918967, 13.271994243968617, 13.348570867018266, 13.425147490067914, 13.501724113117564, 13.578300736167215, 13.654877359216863, 13.731453982266512, 13.808030605316162, 13.884607228365812, 13.961183851415461, 14.03776047446511, 14.11433709751476, 14.190913720564408, 14.267490343614057, 14.344066966663707, 14.420643589713357, 14.497220212763006, 14.573796835812654, 14.650373458862305 ], "y": [ 1.0, 1.0, 2.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 1.0, 2.0, 2.0, 2.0, 2.0, 2.0, 2.0, 3.0, 3.0, 4.0, 4.0, 5.0, 5.0, 5.0, 5.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0, 9.0, 10.0, 10.0, 11.0, 12.0, 12.0, 12.0, 13.0, 14.0, 15.0, 17.0, 18.0, 18.0, 17.0, 17.0, 18.0, 18.0, 19.0, 19.0, 20.0, 21.0, 22.0, 22.0, 22.0, 22.0, 21.0, 21.0, 21.0, 20.0, 20.0, 20.0, 19.0, 18.0, 18.0, 17.0, 17.0, 16.0, 16.0, 15.0, 14.0, 13.0, 12.0, 11.0, 9.0, 8.0, 6.0, 5.0, 4.0, 3.0, 2.0, 1.0, 1.0, 1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0 ] } } } }