Mercurial > repos > iuc > multiqc

view test-data/busco.txt @ 14:b2f1f75d49c4 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit fb0d9f3e89dc31e481f4bdb3e498a713f9e60def
author iuc
date Sat, 13 Apr 2019 08:30:21 -0400
parents 3bad335ccea9
children
line wrap: on
line source

# BUSCO version is: 2.0 
# The lineage dataset is: fungi_odb9 (Creation date: 2016-02-13, number of species: 85, number of BUSCOs: 290)
# To reproduce this run: python /home/remi/opt/busco/BUSCO.py -i /assemblies/BUSCO_v2_test.scf.fasta -o BUSCO_v2_test -l fungi_odb9/ -m genome -c 4 -sp aspergillus_nidulans
#
# Summarized benchmarking in BUSCO notation for file /assemblies/BUSCO_v2_test.scf.fasta
# BUSCO was run in mode: genome

	C:88.6%[S:87.9%,D:0.7%],F:1.7%,M:9.7%,n:290

	257	Complete BUSCOs (C)
	255	Complete and single-copy BUSCOs (S)
	2	Complete and duplicated BUSCOs (D)
	5	Fragmented BUSCOs (F)
	28	Missing BUSCOs (M)
	290	Total BUSCO groups searched