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view test-data/hicexplorer2.log @ 14:b2f1f75d49c4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit fb0d9f3e89dc31e481f4bdb3e498a713f9e60def
author iuc
date Sat, 13 Apr 2019 08:30:21 -0400
parents 01237d721a9f
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File	small_test_rf_matrix.h5		
Pairs considered	99983		
Min rest. site distance	152		
Max rest. site distance	1500		

#	count	(percentage w.r.t. total sequenced reads)
Pairs mappable, unique and high quality	52726	(52.73)
Pairs used	35934	(35.94)
One mate unmapped	8777	(8.78)
One mate not unique	3603	(3.60)
One mate low quality	34877	(34.88)

#	count	(percentage w.r.t. mappable, unique and high quality pairs)
dangling end	209	(0.40)
self ligation (removed)	5056	(9.59)
One mate not close to rest site	751	(1.42)
same fragment (800 bp)	10146	(19.24)
self circle	618	(1.17)
duplicated pairs	12	(0.02)

#	count	(percentage w.r.t. total valid pairs used)
inter chromosomal	5849	(16.28)
short range < 20kb	8071	(22.46)
long range	22014	(61.26)
inward pairs	6977	(19.42)
outward pairs	8907	(24.79)
left pairs	7012	(19.51)
right pairs	7189	(20.01)