Mercurial > repos > iuc > multiqc
view test-data/post_aligner_soft_stats.tabular @ 16:bf675f34b056 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
| author | iuc |
|---|---|
| date | Sat, 16 May 2020 09:40:45 -0400 |
| parents | 1c2db0054039 |
| children |
line wrap: on
line source
Sample QUAST_mqc-generalstats-quast-N50 QUAST_mqc-generalstats-quast-Total_length featureCounts_mqc-generalstats-featurecounts-percent_assigned featureCounts_mqc-generalstats-featurecounts-Assigned Picard_mqc-generalstats-picard-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-prokka-organism Prokka_mqc-generalstats-prokka-contigs Prokka_mqc-generalstats-prokka-bases Prokka_mqc-generalstats-prokka-CDS Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_records Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_SNPs Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_indels Bcftools Stats_mqc-generalstats-bcftools_stats-tstv Bcftools Stats_mqc-generalstats-bcftools_stats-number_of_MNPs Bamtools_mqc-generalstats-bamtools-duplicates_pct Bamtools_mqc-generalstats-bamtools-mapped_reads_pct Picard_mqc-generalstats-picard-PERCENT_DUPLICATION Picard_mqc-generalstats-picard-summed_median Picard_mqc-generalstats-picard-summed_mean GATK VariantEval_mqc-generalstats-gatk_varianteval-known_titv GATK VariantEval_mqc-generalstats-gatk_varianteval-novel_titv HTSeq Count_mqc-generalstats-htseq_count-percent_assigned HTSeq Count_mqc-generalstats-htseq_count-assigned Picard_mqc-generalstats-picard-PCT_RIBOSOMAL_BASES Picard_mqc-generalstats-picard-PCT_MRNA_BASES Samtools Flagstat_mqc-generalstats-samtools_flagstat-mapped_passed Samtools Stats_mqc-generalstats-samtools_stats-error_rate Samtools Stats_mqc-generalstats-samtools_stats-non_primary_alignments Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_properly_paired_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_MQ0_percent Samtools Stats_mqc-generalstats-samtools_stats-raw_total_sequences SnpEff_mqc-generalstats-snpeff-Change_rate SnpEff_mqc-generalstats-snpeff-Ts_Tv_ratio SnpEff_mqc-generalstats-snpeff-Number_of_variants_before_filter Samblaster_mqc-generalstats-samblaster-pct_dups 14892_1#15 115136.0 18435361.0 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 Sample1 Helicobacter pylori 30 1629978 1548 Sample2 Escherichia coli 52 162997532523 1548 Test1 5522770.0 4474244.0 902934.0 1.97 72330.0 bamtools_txt 0.0 93.125 dataset_114 0.005582 dataset_197 176 271.809759 gatk_varianteval_txt 0.0 2.2 htseq_txt 0.0 0 picard_CollectRnaSeqMetrics_bam 79.62310000000001 samtools_flagstat_txt 20689039 samtools_stats_txt 0.004248509 12111.0 641821.0 100.0 99.03477760933345 0.010906467691147531 641821.0 snpeff_csv 3190.0 0.0 972155.0 virtual-normal 1.28