view test-data/bbduk.txt @ 28:31c42a2c02d3 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 7f250f4b9484eceef360ba62ef519c94b56c0b97

Executing jgi.BBDuk [in=forward.fastq.gz, out=/data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat, ref=dataset_5c3ad7b3-f75c-4f5a-a70e-15ae843bc97c.dat.fa, k=27, rcomp=t, maskmiddle=t, minkmerhits=1, minkmerfraction=0.0, mincovfraction=0.0, hammingdistance=0, qhdist=0, editdistance=0, forbidn=f, trimfailures=f, findbestmatch=f, skipr1=f, skipr2=f, t=1]
Version 39.08

Set threads to 1
Changed from ASCII-33 to ASCII-64 on input quality B (Q33) for base N at lines 1 and 3, position 0 while prescanning.
Unspecified format for output /data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat; defaulting to fastq.
0.398 seconds.
Initial:
Memory: max=3672m, total=270m, free=243m, used=27m

Added 2970 kmers; time: 	0.549 seconds.
Memory: max=3672m, total=270m, free=238m, used=32m

Input is being processed as unpaired
Changed from ASCII-33 to ASCII-64 on input ;: 59 -> 28
Started output streams:	0.052 seconds.
Processing time:   		0.106 seconds.

Input:                  	100 reads 		10000 bases.
Contaminants:           	0 reads (0.00%) 	0 bases (0.00%)
Total Removed:          	0 reads (0.00%) 	0 bases (0.00%)
Result:                 	100 reads (100.00%) 	10000 bases (100.00%)

Time:                         	0.711 seconds.
Reads Processed:         100 	0.14k reads/sec
Bases Processed:       10000 	0.01m bases/sec