view test-data/flexbar.txt @ 24:f7e2f1eb3a16 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58

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Flexbar - flexible barcode and adapter removal, version 3.0
Developed with SeqAn, the library for sequence analysis

Available on github.com/seqan/flexbar


Local time:            Mon Jun  5 13:20:34 2017

Number of threads:     1
Bundled fragments:     256

Target name:           result_right
File type:             fasta
Reads file:            reads.fasta
Adapter file:          adapters.fasta

max-uncalled:          0
min-read-length:       10

adapter-trim-end:      RIGHT
adapter-min-overlap:   4
adapter-error-rate:    0.1
adapter-match:         1
adapter-mismatch:     -1
adapter-gap:          -6

Adapter:               Sequence:
ad1                    CGTCTT


Processing reads ...done.

Elapsed time:  < 1 sec


Adapter removal statistics
==========================
Adapter:            Overlap removal:    Full length:
ad1                 11                  10

Min, max, mean and median overlap: 5 / 6 / 5 / 6


Output file statistics
======================
Read file:               result_right.fasta
  written reads          10
  short reads            3


Filtering statistics
====================
Processed reads                   13
  skipped due to uncalled bases    0
  short prior to adapter removal   0
  finally skipped short reads      3
Discarded reads overall            3
Remaining reads                   10   (76%)

Processed bases   422
Remaining bases   231   (54% of input)


Flexbar completed adapter removal.