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file bamtools.txt 532 -rw-r--r--
file bcftools.txt 34128 -rw-r--r--
file bismark.txt 1728 -rw-r--r--
file bowtie2_1.txt 220 -rw-r--r--
file bowtie2_2.txt 220 -rw-r--r--
file busco.txt 663 -rw-r--r--
file cc_ko15.bpc.tab 29501 -rw-r--r--
file cc_wt15.bpc.tab 29484 -rw-r--r--
file cutadapt.txt 3064 -rw-r--r--
file deeptools_bamPEFragmentSize.txt 1821 -rw-r--r--
file deeptools_estimateReadFiltering.txt 410 -rw-r--r--
file deeptools_plotCoverageOutRawCounts.txt 428882 -rw-r--r--
file deeptools_plotCoverageStdout.txt 137 -rw-r--r--
file deeptools_plotEnrichment.txt 873 -rw-r--r--
file deeptools_plotFingerprintOutRawCounts.txt 146482 -rw-r--r--
file fastp1.json.txt 37720 -rw-r--r--
file fastp2.json.txt 146002 -rw-r--r--
file fastqc_1.txt 66973 -rw-r--r--
file fastqc_2.txt 66410 -rw-r--r--
file featureCounts.txt 814 -rw-r--r--
file flexbar.txt 1673 -rw-r--r--
file gatk_BaseRecalibrator.txt 406567 -rw-r--r--
file gatk_varianteval.txt 380682 -rw-r--r--
file genome_results.txt 5134 -rw-r--r--
file hicexplorer1.log 833 -rw-r--r--
file hicexplorer2.log 846 -rw-r--r--
file hisat2_1.txt 171 -rw-r--r--
file hisat2_2.txt 171 -rw-r--r--
file htseq.txt 92 -rw-r--r--
file junction_annotation.txt 547 -rw-r--r--
file junction_saturation.txt 589 -rw-r--r--
file kallisto_1.txt 22343 -rw-r--r--
file kallisto_2.txt 22760 -rw-r--r--
file macs_1.txt 6957 -rw-r--r--
file macs_2.txt 6867 -rw-r--r--
file mqc_fastqc_per_base_sequence_quality_plot_1.txt 2235 -rw-r--r--
file picard_CollectAlignmentSummaryMetrics.txt 1665 -rw-r--r--
file picard_CollectBaseDistributionByCycle.txt 4614 -rw-r--r--
file picard_CollectInsertSizeMetrics.txt 6914 -rw-r--r--
file picard_CollectRnaSeqMetrics.txt 2535 -rw-r--r--
file picard_MarkDuplicates.txt 2705 -rw-r--r--
file picard_collectGcBias.txt 5175 -rw-r--r--
file prokka_1.txt 135 -rw-r--r--
file prokka_2.txt 100 -rw-r--r--
file pycoqc.json 28642 -rw-r--r--
file quast.tsv 1018 -rw-r--r--
file rseqc.txt 645 -rw-r--r--
file samblaster.txt 1096 -rw-r--r--
file samtools_flagstat.txt 398 -rw-r--r--
file samtools_idxstats.txt 1514 -rw-r--r--
file samtools_stats.txt 197687 -rw-r--r--
file slamdunk_reads1_overallrates.csv 171 -rw-r--r--
file slamdunk_reads2_overallrates.csv 165 -rw-r--r--
file slamdunk_summary.txt 299 -rw-r--r--
file snpeff.csv 163560 -rw-r--r--
file sortmerna.txt 4038 -rw-r--r--
file star_counts.txt 91 -rw-r--r--
file star_log.txt 1811 -rw-r--r--
file tophat.txt 557 -rw-r--r--
file trimmomatic.txt 581 -rw-r--r--
file vcftools.txt 56241 -rw-r--r--