# HG changeset patch
# User iuc
# Date 1533507988 14400
# Node ID ce0f144f4835b82e8949b6c6fdb72c50ca1f3dcd
# Parent  df99138d277636ea810834d32780ea97091d86e6
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit e22f6c00774c9ec9f29773eba43fd509d55031e4

diff -r df99138d2776 -r ce0f144f4835 multiqc.xml
--- a/multiqc.xml	Wed Apr 25 07:59:52 2018 -0400
+++ b/multiqc.xml	Sun Aug 05 18:26:28 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.0">
+<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@.1">
     <description>aggregate results from bioinformatics analyses into a single report</description>
     <macros>
         <token name="@WRAPPER_VERSION@">1.5</token>
@@ -306,8 +306,9 @@
                 #end for
             #elif str($repeat2.type.type) == "infer_experiment"
                 #set $pattern = "Fraction of reads explained by"
-                #for $k, $file in enumerate($repeat2.type.input)
-                    #set file_path = os.path.join($repeat_dir, 'file_' + str($k) + '_infer_experiment.txt') 
+                #for $file in $repeat2.type.input
+                    @ESCAPE_IDENTIFIER@
+                    #set file_path = os.path.join($repeat_dir, str($identifier))
                     grep -q "$pattern" $file || die "'$pattern' not found in the file" &&
                     ln -s '$file' '$file_path' &&
                 #end for