Mercurial > repos > iuc > mummer_mummer
comparison mummer.xml @ 3:48823c9635a4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 7ea9a5c6d9e7212c38be96baa6615af1ea9d5a8e"
| author | iuc |
|---|---|
| date | Tue, 13 Oct 2020 21:40:33 +0000 |
| parents | fc143c06a842 |
| children | bcd65de9725b |
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| 2:fc143c06a842 | 3:48823c9635a4 |
|---|---|
| 15 $force | 15 $force |
| 16 $chars | 16 $chars |
| 17 $print_length | 17 $print_length |
| 18 $substring | 18 $substring |
| 19 $position | 19 $position |
| 20 -threads \${GALAXY_SLOTS:-1} | |
| 21 -qthreads \${GALAXY_SLOTS:-1} | |
| 20 #if $options.advanced == 'enable' | 22 #if $options.advanced == 'enable' |
| 21 -k '$options.suffix' | 23 -k '$options.suffix' |
| 22 -threads '$options.threads' | |
| 23 -qthreads '$options.qthreads' | |
| 24 -suflink '$options.suflink' | 24 -suflink '$options.suflink' |
| 25 -child '$options.child' | 25 -child '$options.child' |
| 26 -skip '$options.skip' | 26 -skip '$options.skip' |
| 27 -kmer '$options.kmer' | 27 -kmer '$options.kmer' |
| 28 #end if | 28 #end if |
| 76 <option value="defaults">Use defaults</option> | 76 <option value="defaults">Use defaults</option> |
| 77 <option value="enable">Select additional options</option> | 77 <option value="enable">Select additional options</option> |
| 78 </param> | 78 </param> |
| 79 <when value="enable" > | 79 <when value="enable" > |
| 80 <param name="suffix" type="integer" argument="-k" value="1" label="Suffix" help="Sampled suffix positions. (-k)" /> | 80 <param name="suffix" type="integer" argument="-k" value="1" label="Suffix" help="Sampled suffix positions. (-k)" /> |
| 81 <param name="threads" type="integer" argument="-threads" value="3" label="Threads" | |
| 82 help="Number of threads to use for -maxmatch; only valid if above parameter is greater than one. (-threads)" /> | |
| 83 <param name="qthreads" type="integer" argument="-qthreads" value="3" label="Qthreads" help="Number of threads to use for queries. (-qthreads)" /> | |
| 84 <param name="suflink" type="select" label="Suflink" help="Use suffix links in the index and during search? (-suflink)" > | 81 <param name="suflink" type="select" label="Suflink" help="Use suffix links in the index and during search? (-suflink)" > |
| 85 <option value="0">No</option> | 82 <option value="0">No</option> |
| 86 <option value="1">Yes</option> | 83 <option value="1">Yes</option> |
| 87 </param> | 84 </param> |
| 88 <param name="child" type="select" label="Child" help="Use child table in the index and during search? (-child)" > | 85 <param name="child" type="select" label="Child" help="Use child table in the index and during search? (-child)" > |