comparison mummer.xml @ 4:bcd65de9725b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"

3:48823c9635a4

<tool id="mummer_mummer" name="Mummer" version="@MUMMER_VERSION@@WRAPPER_VERSION@">
    <description>Align two or more sequences</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <expand macro="gnuplot_requirement"/>
    </expand>
    <command detect_errors="exit_code">
        <![CDATA[

    </outputs>
    <tests>
        <test>
            <param name="reference_sequence" ftype="fasta" value="human_aqp3.fasta" />
            <param name="query_sequence" ftype="fasta" value="mouse_aqp3.fasta" />
            <param name="options" value="defaults" />
            <param name="plot" value="yes" />
            <output name="output" ftype="tabular" compare="diff" value="mummer.txt" />
            <output name="png_output" ftype="png" compare="sim_size" value="plot.png" />
        </test>
    </tests>

4:bcd65de9725b

<tool id="mummer_mummer" name="Mummer" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>Align two or more sequences</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools"/>
    <expand macro="requirements">
        <expand macro="gnuplot_requirement"/>
    </expand>
    <command detect_errors="exit_code">
        <![CDATA[

    </outputs>
    <tests>
        <test>
            <param name="reference_sequence" ftype="fasta" value="human_aqp3.fasta" />
            <param name="query_sequence" ftype="fasta" value="mouse_aqp3.fasta" />
            <param name="options|advanced" value="defaults" />
            <param name="plot" value="yes" />
            <output name="output" ftype="tabular" compare="diff" value="mummer.txt" />
            <output name="png_output" ftype="png" compare="sim_size" value="plot.png" />
        </test>
    </tests>