Mercurial > repos > iuc > mummer_nucmer
changeset 1:5b0b49b5421c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 96608e94742d17cb73d57201099ff5f5abbef276"
| author | iuc |
|---|---|
| date | Fri, 24 Jan 2020 15:56:52 -0500 |
| parents | a18fb4f826fc |
| children | 636b049e6141 |
| files | macros.xml nucmer.xml |
| diffstat | 2 files changed, 9 insertions(+), 3 deletions(-) [+] |
line wrap: on
line diff
--- a/macros.xml Wed Dec 05 02:37:36 2018 -0500 +++ b/macros.xml Fri Jan 24 15:56:52 2020 -0500 @@ -1,4 +1,5 @@ <macros> + <token name="@MUMMER_GNUPLOT_MANUAL@"><![CDATA[&& gnuplot < out.gp]]></token> <xml name="citation"> <citations> <citation type="bibtex"> @@ -12,7 +13,11 @@ }</citation> </citations> </xml> + <xml name="gnuplot_requirement"> + <requirement type="package" version="5.2.7">gnuplot</requirement> + </xml> <token name="@MUMMER_VERSION@">4.0.0beta2</token> + <token name="@WRAPPER_VERSION@">+galaxy0</token> <xml name="requirements"> <requirements> <requirement type="package" version="@MUMMER_VERSION@">mummer4</requirement>
--- a/nucmer.xml Wed Dec 05 02:37:36 2018 -0500 +++ b/nucmer.xml Fri Jan 24 15:56:52 2020 -0500 @@ -1,10 +1,10 @@ -<tool id="mummer_nucmer" name="Nucmer" version="@MUMMER_VERSION@"> +<tool id="mummer_nucmer" name="Nucmer" version="@MUMMER_VERSION@@WRAPPER_VERSION@"> <description>Align two or more sequences</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"> - <requirement type="package" version="5.2.3">gnuplot</requirement> + <expand macro="gnuplot_requirement"/> </expand> <command detect_errors="exit_code"> <![CDATA[ @@ -56,8 +56,9 @@ -y [$mumplot.range.min_y:$mumplot.range.max_y] #end if 'out.delta' + @MUMMER_GNUPLOT_MANUAL@ #end if - ]]> + ]]> </command> <inputs> <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" help="FastA or multi-FastA" />