Mercurial > repos > iuc > mummer_show_coords
comparison test-data/report.txt @ 3:b4124df98b26 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
| author | iuc |
|---|---|
| date | Sat, 27 Nov 2021 10:00:07 +0000 |
| parents | f8734af48332 |
| children | cf3c9489c088 |
comparison
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| 2:959c1f8dae95 | 3:b4124df98b26 |
|---|---|
| 1 | 1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat |
| 2 | 2 NUCMER |
| 3 | |
| 4 | |
| 5 | |
| 6 | |
| 7 | |
| 8 | |
| 9 | |
| 10 | |
| 11 | 3 |
| 12 [REF] [QRY] | 4 [REF] [QRY] |
| 13 .A 0(0.00%) 0(0.00%) | 5 [Sequences] |
| 14 .A 0(0.00%) 3(23.08%) | 6 TotalSeqs 1 1 |
| 15 .C 0(0.00%) 0(0.00%) | 7 AlignedSeqs 1(100.0000%) 1(100.0000%) |
| 16 .C 0(0.00%) 5(38.46%) | 8 UnalignedSeqs 0(0.0000%) 0(0.0000%) |
| 17 .G 0(0.00%) 0(0.00%) | 9 |
| 18 .G 1(7.69%) 2(15.38%) | 10 [Bases] |
| 19 .T 0(0.00%) 0(0.00%) | 11 TotalBases 6480 5460 |
| 20 .T 2(15.38%) 0(0.00%) | 12 AlignedBases 670(10.3395%) 663(12.1429%) |
| 21 /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta | 13 UnalignedBases 5810(89.6605%) 4797(87.8571%) |
| 14 | |
| 15 [Alignments] | |
| 22 1-to-1 2 2 | 16 1-to-1 2 2 |
| 23 A. 0(0.00%) 0(0.00%) | 17 TotalLength 670 663 |
| 24 A. 3(23.08%) 0(0.00%) | 18 AvgLength 335.0000 331.5000 |
| 25 AC 6(7.69%) 5(6.41%) | 19 AvgIdentity 86.4791 86.4791 |
| 26 AC 1(100.00%) 0(0.00%) | 20 |
| 27 AG 0(0.00%) 0(0.00%) | 21 M-to-M 2 2 |
| 28 AG 2(2.56%) 5(6.41%) | 22 TotalLength 670 663 |
| 29 AT 0(0.00%) 0(0.00%) | 23 AvgLength 335.0000 331.5000 |
| 30 AT 2(2.56%) 2(2.56%) | 24 AvgIdentity 86.4791 86.4791 |
| 31 AlignedBases 670(10.34%) 663(12.14%) | 25 |
| 32 AlignedSeqs 1(100.00%) 1(100.00%) | 26 [Feature Estimates] |
| 33 AvgIdentity 86.48 86.48 | |
| 34 AvgIdentity 86.48 86.48 | |
| 35 AvgLength 335.00 331.50 | |
| 36 AvgLength 335.00 331.50 | |
| 37 Breakpoints 4 4 | 27 Breakpoints 4 4 |
| 38 C. 0(0.00%) 0(0.00%) | 28 Relocations 0 0 |
| 39 C. 5(38.46%) 0(0.00%) | 29 Translocations 0 0 |
| 40 CA 0(0.00%) 1(100.00%) | 30 Inversions 0 0 |
| 41 CA 5(6.41%) 6(7.69%) | 31 |
| 42 CG 0(0.00%) 0(0.00%) | 32 Insertions 3 3 |
| 43 CG 6(7.69%) 6(7.69%) | |
| 44 CT 0(0.00%) 0(0.00%) | |
| 45 CT 28(35.90%) 9(11.54%) | |
| 46 G. 0(0.00%) 0(0.00%) | |
| 47 G. 2(15.38%) 1(7.69%) | |
| 48 GA 0(0.00%) 0(0.00%) | |
| 49 GA 5(6.41%) 2(2.56%) | |
| 50 GC 0(0.00%) 0(0.00%) | |
| 51 GC 6(7.69%) 6(7.69%) | |
| 52 GT 0(0.00%) 0(0.00%) | |
| 53 GT 5(6.41%) 2(2.56%) | |
| 54 InsertionAvg 1936.67 1599.00 | |
| 55 InsertionSum 5810 4797 | 33 InsertionSum 5810 4797 |
| 56 Insertions 3 3 | 34 InsertionAvg 1936.6667 1599.0000 |
| 57 Inversions 0 0 | 35 |
| 58 M-to-M 2 2 | |
| 59 NUCMER | |
| 60 Relocations 0 0 | |
| 61 T. 0(0.00%) 0(0.00%) | |
| 62 T. 0(0.00%) 2(15.38%) | |
| 63 TA 0(0.00%) 0(0.00%) | |
| 64 TA 2(2.56%) 2(2.56%) | |
| 65 TC 0(0.00%) 0(0.00%) | |
| 66 TC 9(11.54%) 28(35.90%) | |
| 67 TG 0(0.00%) 0(0.00%) | |
| 68 TG 2(2.56%) 5(6.41%) | |
| 69 TandemIns 0 0 | 36 TandemIns 0 0 |
| 70 TandemInsAvg 0.00 0.00 | |
| 71 TandemInsSum 0 0 | 37 TandemInsSum 0 0 |
| 72 TotalBases 6480 5460 | 38 TandemInsAvg 0.0000 0.0000 |
| 39 | |
| 40 [SNPs] | |
| 41 TotalSNPs 78 78 | |
| 42 TG 2(2.5641%) 5(6.4103%) | |
| 43 TC 9(11.5385%) 28(35.8974%) | |
| 44 TA 2(2.5641%) 2(2.5641%) | |
| 45 GC 6(7.6923%) 6(7.6923%) | |
| 46 GA 5(6.4103%) 2(2.5641%) | |
| 47 GT 5(6.4103%) 2(2.5641%) | |
| 48 CT 28(35.8974%) 9(11.5385%) | |
| 49 CA 5(6.4103%) 6(7.6923%) | |
| 50 CG 6(7.6923%) 6(7.6923%) | |
| 51 AT 2(2.5641%) 2(2.5641%) | |
| 52 AG 2(2.5641%) 5(6.4103%) | |
| 53 AC 6(7.6923%) 5(6.4103%) | |
| 54 | |
| 55 TotalGSNPs 1 1 | |
| 56 TA 0(0.0000%) 0(0.0000%) | |
| 57 TG 0(0.0000%) 0(0.0000%) | |
| 58 TC 0(0.0000%) 0(0.0000%) | |
| 59 AG 0(0.0000%) 0(0.0000%) | |
| 60 AC 1(100.0000%) 0(0.0000%) | |
| 61 AT 0(0.0000%) 0(0.0000%) | |
| 62 GC 0(0.0000%) 0(0.0000%) | |
| 63 GA 0(0.0000%) 0(0.0000%) | |
| 64 GT 0(0.0000%) 0(0.0000%) | |
| 65 CT 0(0.0000%) 0(0.0000%) | |
| 66 CG 0(0.0000%) 0(0.0000%) | |
| 67 CA 0(0.0000%) 1(100.0000%) | |
| 68 | |
| 69 TotalIndels 13 13 | |
| 70 T. 0(0.0000%) 2(15.3846%) | |
| 71 G. 2(15.3846%) 1(7.6923%) | |
| 72 C. 5(38.4615%) 0(0.0000%) | |
| 73 A. 3(23.0769%) 0(0.0000%) | |
| 74 .G 1(7.6923%) 2(15.3846%) | |
| 75 .C 0(0.0000%) 5(38.4615%) | |
| 76 .A 0(0.0000%) 3(23.0769%) | |
| 77 .T 2(15.3846%) 0(0.0000%) | |
| 78 | |
| 73 TotalGIndels 0 0 | 79 TotalGIndels 0 0 |
| 74 TotalGSNPs 1 1 | 80 T. 0(0.0000%) 0(0.0000%) |
| 75 TotalIndels 13 13 | 81 A. 0(0.0000%) 0(0.0000%) |
| 76 TotalLength 670 663 | 82 G. 0(0.0000%) 0(0.0000%) |
| 77 TotalLength 670 663 | 83 C. 0(0.0000%) 0(0.0000%) |
| 78 TotalSNPs 78 78 | 84 .A 0(0.0000%) 0(0.0000%) |
| 79 TotalSeqs 1 1 | 85 .C 0(0.0000%) 0(0.0000%) |
| 80 Translocations 0 0 | 86 .G 0(0.0000%) 0(0.0000%) |
| 81 UnalignedBases 5810(89.66%) 4797(87.86%) | 87 .T 0(0.0000%) 0(0.0000%) |
| 82 UnalignedSeqs 0(0.00%) 0(0.00%) | |
| 83 [Alignments] | |
| 84 [Bases] | |
| 85 [Feature Estimates] | |
| 86 [SNPs] | |
| 87 [Sequences] |