NanoPlot report
Summary statistics prior to filtering
| feature |
|
| General summary |
|
| Active channels |
169.0 |
| Mean read length |
23,212.6 |
| Mean read quality |
10.1 |
| Median read length |
9,390.0 |
| Median read quality |
10.3 |
| Number of reads |
371.0 |
| Read length N50 |
60,395.0 |
| Total bases |
8,611,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
371 (100.0%) 8.6Mb |
| >Q7 |
371 (100.0%) 8.6Mb |
| >Q10 |
207 (55.8%) 4.7Mb |
| >Q12 |
49 (13.2%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (6333) |
| 2 |
13.1 (5448) |
| 3 |
12.9 (27834) |
| 4 |
12.8 (20351) |
| 5 |
12.8 (97730) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
393431 (10.6) |
| 2 |
341725 (11.8) |
| 3 |
320662 (8.0) |
| 4 |
226843 (9.1) |
| 5 |
221901 (10.0) |
Summary statistics after filtering
| feature |
|
| General summary |
|
| Active channels |
169.0 |
| Mean read length |
23,212.6 |
| Mean read quality |
10.1 |
| Median read length |
9,390.0 |
| Median read quality |
10.3 |
| Number of reads |
371.0 |
| Read length N50 |
60,395.0 |
| Total bases |
8,611,871.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
371 (100.0%) 8.6Mb |
| >Q7 |
371 (100.0%) 8.6Mb |
| >Q10 |
207 (55.8%) 4.7Mb |
| >Q12 |
49 (13.2%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (6333) |
| 2 |
13.1 (5448) |
| 3 |
12.9 (27834) |
| 4 |
12.8 (20351) |
| 5 |
12.8 (97730) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
393431 (10.6) |
| 2 |
341725 (11.8) |
| 3 |
320662 (8.0) |
| 4 |
226843 (9.1) |
| 5 |
221901 (10.0) |
Plots
Histogram of read lengths
Weighted Histogram of read lengths
Yield by length
Read lengths vs Average read quality plot using hexagonal bins
Read lengths vs Average read quality plot using a kernel density estimation
Number of reads generated per channel
Cumulative yield
Cumulative yield
Number of reads over time
Number of active pores over time
Violin plot of read lengths over time
Violin plot of quality over time
