Summary Statistics prior to filtering

Summary Statistics after filtering

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using hexagonal bins

Read lengths vs Average read quality plot using a kernel density estimation

Number of reads generated per channel

Cumulative yield

Cumulative yield

Number of reads over time

Number of active pores over time

Violin plot of read lengths over time

Violin plot of quality over time

NanoPlot report

Summary statistics prior to filtering

feature
General summary
Active channels 169.0
Mean read length 23,212.6
Mean read quality 10.1
Median read length 9,390.0
Median read quality 10.3
Number of reads 371.0
Read length N50 60,395.0
Total bases 8,611,871.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 371 (100.0%) 8.6Mb
>Q7 371 (100.0%) 8.6Mb
>Q10 207 (55.8%) 4.7Mb
>Q12 49 (13.2%) 0.9Mb
>Q15 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 13.3 (6333)
2 13.1 (5448)
3 12.9 (27834)
4 12.8 (20351)
5 12.8 (97730)
Top 5 longest reads and their mean basecall quality score
1 393431 (10.6)
2 341725 (11.8)
3 320662 (8.0)
4 226843 (9.1)
5 221901 (10.0)

Summary statistics after filtering

feature
General summary
Active channels 169.0
Mean read length 23,212.6
Mean read quality 10.1
Median read length 9,390.0
Median read quality 10.3
Number of reads 371.0
Read length N50 60,395.0
Total bases 8,611,871.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 371 (100.0%) 8.6Mb
>Q7 371 (100.0%) 8.6Mb
>Q10 207 (55.8%) 4.7Mb
>Q12 49 (13.2%) 0.9Mb
>Q15 0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 13.3 (6333)
2 13.1 (5448)
3 12.9 (27834)
4 12.8 (20351)
5 12.8 (97730)
Top 5 longest reads and their mean basecall quality score
1 393431 (10.6)
2 341725 (11.8)
3 320662 (8.0)
4 226843 (9.1)
5 221901 (10.0)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Yield by length





Read lengths vs Average read quality plot using hexagonal bins





Read lengths vs Average read quality plot using a kernel density estimation





Number of reads generated per channel





Cumulative yield





Cumulative yield





Number of reads over time





Number of active pores over time





Violin plot of read lengths over time





Violin plot of quality over time