Summary Statistics prior to filtering
Summary Statistics after filtering
Histogram of read lengths after log transformation
Weighted Histogram of read lengths
Weighted Histogram of read lengths after log transformation
Read lengths vs Average read quality plot using hexagonal bins
Read lengths vs Average read quality plot using a kernel density estimation
Number of reads generated per channel
Number of active pores over time
feature | |
---|---|
General summary | |
Active channels | 169.0 |
Mean read length | 23,212.6 |
Mean read quality | 10.1 |
Median read length | 9,390.0 |
Median read quality | 10.3 |
Number of reads | 371.0 |
Read length N50 | 60,395.0 |
Total bases | 8,611,871.0 |
Number, percentage and megabases of reads above quality cutoffs | |
>Q5 | 371 (100.0%) 8.6Mb |
>Q7 | 371 (100.0%) 8.6Mb |
>Q10 | 207 (55.8%) 4.7Mb |
>Q12 | 49 (13.2%) 0.9Mb |
>Q15 | 0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths | |
1 | 13.3 (6333) |
2 | 13.1 (5448) |
3 | 12.9 (27834) |
4 | 12.8 (20351) |
5 | 12.8 (97730) |
Top 5 longest reads and their mean basecall quality score | |
1 | 393431 (10.6) |
2 | 341725 (11.8) |
3 | 320662 (8.0) |
4 | 226843 (9.1) |
5 | 221901 (10.0) |
feature | |
---|---|
General summary | |
Active channels | 169.0 |
Mean read length | 23,212.6 |
Mean read quality | 10.1 |
Median read length | 9,390.0 |
Median read quality | 10.3 |
Number of reads | 371.0 |
Read length N50 | 60,395.0 |
Total bases | 8,611,871.0 |
Number, percentage and megabases of reads above quality cutoffs | |
>Q5 | 371 (100.0%) 8.6Mb |
>Q7 | 371 (100.0%) 8.6Mb |
>Q10 | 207 (55.8%) 4.7Mb |
>Q12 | 49 (13.2%) 0.9Mb |
>Q15 | 0 (0.0%) 0.0Mb |
Top 5 highest mean basecall quality scores and their read lengths | |
1 | 13.3 (6333) |
2 | 13.1 (5448) |
3 | 12.9 (27834) |
4 | 12.8 (20351) |
5 | 12.8 (97730) |
Top 5 longest reads and their mean basecall quality score | |
1 | 393431 (10.6) |
2 | 341725 (11.8) |
3 | 320662 (8.0) |
4 | 226843 (9.1) |
5 | 221901 (10.0) |