Summary Statistics

Plots

Histogram of read lengths

Histogram of read lengths after log transformation

Weighted Histogram of read lengths

Weighted Histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality plot using a kernel density estimation

Aligned read lengths vs Sequenced read length plot using dots

Aligned read lengths vs Sequenced read length plot using a kernel density estimation

Read mapping quality vs Average basecall quality plot using dots

Read mapping quality vs Average basecall quality plot using a kernel density estimation

Read length vs Read mapping quality plot using dots

Read length vs Read mapping quality plot using a kernel density estimation

Percent identity vs Average Base Quality plot using dots

Percent identity vs Average Base Quality plot using a kernel density estimation

Aligned read length vs Percent identity plot using dots

Aligned read length vs Percent identity plot using a kernel density estimation

NanoPlot report

Summary statistics

feature
General summary
Average percent identity 85.3
Mean read length 12,291.0
Mean read quality 13.2
Median percent identity 87.3
Median read length 7,577.0
Median read quality 13.5
Number of reads 1,115.0
Read length N50 21,987.0
Total bases 13,704,509.0
Total bases aligned 12,343,518.0
Number, percentage and megabases of reads above quality cutoffs
>Q5 1115 (100.0%) 13.7Mb
>Q7 1115 (100.0%) 13.7Mb
>Q10 1098 (98.5%) 13.6Mb
>Q12 936 (83.9%) 11.9Mb
>Q15 10 (0.9%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1 15.7 (1461; SRR5665597.758)
2 15.5 (1790; SRR5665597.725)
3 15.5 (615; SRR5665597.293)
4 15.5 (162; SRR5665597.876)
5 15.5 (626; SRR5665597.822)
Top 5 longest reads and their mean basecall quality score
1 99139 (13.9; SRR5665597.31)
2 80522 (13.5; SRR5665597.790)
3 79569 (13.5; SRR5665597.332)
4 70195 (10.2; SRR5665597.799)
5 69426 (12.2; SRR5665597.1000)

Plots

Histogram of read lengths





Histogram of read lengths after log transformation





Weighted Histogram of read lengths





Weighted Histogram of read lengths after log transformation





Yield by length





Read lengths vs Average read quality plot using dots





Read lengths vs Average read quality plot using a kernel density estimation





Aligned read lengths vs Sequenced read length plot using dots





Aligned read lengths vs Sequenced read length plot using a kernel density estimation





Read mapping quality vs Average basecall quality plot using dots





Read mapping quality vs Average basecall quality plot using a kernel density estimation





Read length vs Read mapping quality plot using dots





Read length vs Read mapping quality plot using a kernel density estimation





Percent identity vs Average Base Quality plot using dots





Percent identity vs Average Base Quality plot using a kernel density estimation





Aligned read length vs Percent identity plot using dots





Aligned read length vs Percent identity plot using a kernel density estimation