Mercurial > repos > iuc > nanoplot
comparison test-data/NanoStats_post_filtering.txt @ 0:db1eeffba23e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit ad3c2e459ae53ab61df3d967d755fd0b42149328
| author | iuc |
|---|---|
| date | Fri, 28 Sep 2018 19:30:29 -0400 |
| parents | |
| children | acd337269171 |
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| -1:000000000000 | 0:db1eeffba23e |
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| 1 General summary: | |
| 2 Active channels: 169 | |
| 3 Mean read length: 23212.6 | |
| 4 Mean read quality: 10.1 | |
| 5 Median read length: 9390.0 | |
| 6 Median read quality: 10.3 | |
| 7 Number of reads: 371 | |
| 8 Read length N50: 60395 | |
| 9 Total bases: 8611871 | |
| 10 Number, percentage and megabases of reads above quality cutoffs | |
| 11 >Q5: 371 (100.0%) 8.6Mb | |
| 12 >Q7: 371 (100.0%) 8.6Mb | |
| 13 >Q10: 207 (55.8%) 4.7Mb | |
| 14 >Q12: 49 (13.2%) 0.9Mb | |
| 15 >Q15: 0 (0.0%) 0.0Mb | |
| 16 Top 5 highest mean basecall quality scores and their read lengths | |
| 17 1: 13.3 (6333) | |
| 18 2: 13.1 (5448) | |
| 19 3: 12.9 (27834) | |
| 20 4: 12.8 (20351) | |
| 21 5: 12.8 (97730) | |
| 22 Top 5 longest reads and their mean basecall quality score | |
| 23 1: 393431 (10.6) | |
| 24 2: 341725 (11.8) | |
| 25 3: 320662 (8.0) | |
| 26 4: 226843 (9.1) | |
| 27 5: 221901 (10.0) |