diff test-data/NanoStats.txt @ 0:db1eeffba23e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit ad3c2e459ae53ab61df3d967d755fd0b42149328
author iuc
date Fri, 28 Sep 2018 19:30:29 -0400
parents
children acd337269171
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/NanoStats.txt	Fri Sep 28 19:30:29 2018 -0400
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+General summary:	 
+Active channels:	169
+Mean read length:	23212.6
+Mean read quality:	10.1
+Median read length:	9390.0
+Median read quality:	10.3
+Number of reads:	371
+Read length N50:	60395
+Total bases:	8611871
+Number, percentage and megabases of reads above quality cutoffs
+>Q5:	371 (100.0%) 8.6Mb
+>Q7:	371 (100.0%) 8.6Mb
+>Q10:	207 (55.8%) 4.7Mb
+>Q12:	49 (13.2%) 0.9Mb
+>Q15:	0 (0.0%) 0.0Mb
+Top 5 highest mean basecall quality scores and their read lengths
+1:	13.3 (6333)
+2:	13.1 (5448)
+3:	12.9 (27834)
+4:	12.8 (20351)
+5:	12.8 (97730)
+Top 5 longest reads and their mean basecall quality score
+1:	393431 (10.6)
+2:	341725 (11.8)
+3:	320662 (8.0)
+4:	226843 (9.1)
+5:	221901 (10.0)