Mercurial > repos > iuc > ncbi_datasets
comparison datasets_genome.xml @ 16:a6a475ed58cb draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 9a34ebfc4d6b987b71e545dcf5dbdd884cd8d88e
| author | iuc |
|---|---|
| date | Fri, 07 Jun 2024 14:19:58 +0000 |
| parents | 198c75abbf55 |
| children |
comparison
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| 15:198c75abbf55 | 16:a6a475ed58cb |
|---|---|
| 260 <section name="file_choices"> | 260 <section name="file_choices"> |
| 261 <param name="include" value="genome"/> | 261 <param name="include" value="genome"/> |
| 262 <param name="decompress" value="true"/> | 262 <param name="decompress" value="true"/> |
| 263 </section> | 263 </section> |
| 264 <assert_stderr> | 264 <assert_stderr> |
| 265 <has_text text="No assemblies found that match selection"/> | 265 <has_text text="no genome assemblies were found"/> |
| 266 </assert_stderr> | 266 </assert_stderr> |
| 267 <!-- In the current state of the NCBI tool/DB, no output to check. | 267 <!-- In the current state of the NCBI tool/DB, no output to check. |
| 268 But the returned results seem to change from time to time and it might | 268 But the returned results seem to change from time to time and it might |
| 269 be necessary to re-enable this code block if the test fails in the future. --> | 269 be necessary to re-enable this code block if the test fails in the future. --> |
| 270 <!-- | 270 <!-- |
| 303 <output_collection name="sequence_report" type="list" count="2" > | 303 <output_collection name="sequence_report" type="list" count="2" > |
| 304 <element name="GCF_000007445.1"> | 304 <element name="GCF_000007445.1"> |
| 305 <assert_contents> | 305 <assert_contents> |
| 306 <has_text text="GCF_000007445.1"/> | 306 <has_text text="GCF_000007445.1"/> |
| 307 <has_n_lines n="2"/> | 307 <has_n_lines n="2"/> |
| 308 <has_n_columns n="14"/> | 308 <has_n_columns n="15"/> |
| 309 </assert_contents> | 309 </assert_contents> |
| 310 </element> | 310 </element> |
| 311 <element name="GCF_000013305.1"> | 311 <element name="GCF_000013305.1"> |
| 312 <assert_contents> | 312 <assert_contents> |
| 313 <has_text text="GCF_000013305.1"/> | 313 <has_text text="GCF_000013305.1"/> |
| 314 <has_n_lines n="2"/> | 314 <has_n_lines n="2"/> |
| 315 <has_n_columns n="14"/> | 315 <has_n_columns n="15"/> |
| 316 </assert_contents> | 316 </assert_contents> |
| 317 </element> | 317 </element> |
| 318 </output_collection> | 318 </output_collection> |
| 319 <output_collection name="genomic_gtf" type="list"> | 319 <output_collection name="genomic_gtf" type="list"> |
| 320 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> | 320 <element name="GCF_000007445.1" file="GCF_000007445.1.genomic.gtf" compare="contains"/> |
| 442 </element> | 442 </element> |
| 443 </output_collection> | 443 </output_collection> |
| 444 <output_collection name="rna_fasta" type="list" count="1"> | 444 <output_collection name="rna_fasta" type="list" count="1"> |
| 445 <element name="GCF_000146045.2" ftype="fasta.gz"> | 445 <element name="GCF_000146045.2" ftype="fasta.gz"> |
| 446 <assert_contents> | 446 <assert_contents> |
| 447 <has_size value="2784899" delta="2000"/> | 447 <has_size min="2700000" max="2800000"/> |
| 448 </assert_contents> | 448 </assert_contents> |
| 449 </element> | 449 </element> |
| 450 </output_collection> | 450 </output_collection> |
| 451 </test> | 451 </test> |
| 452 <test expect_num_outputs="3"> | 452 <test expect_num_outputs="3"> |