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diff test-data/GCF_000007445.1.genomic.gtf @ 21:0f3b3813b6ae draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit c1c3f90e4aa7dc258aa61d98ec4eac0b97eef426
author iuc
date Mon, 21 Jul 2025 19:28:16 +0000
parents 6c829a430475
children
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--- a/test-data/GCF_000007445.1.genomic.gtf	Mon Mar 17 11:05:45 2025 +0000
+++ b/test-data/GCF_000007445.1.genomic.gtf	Mon Jul 21 19:28:16 2025 +0000
@@ -1,6 +1,5 @@
-#!annotation-source NCBI RefSeq 
 NC_004431.1	RefSeq	gene	190	255	.	+	.	gene_id "C_RS00005"; transcript_id ""; gbkey "Gene"; gene "thrL"; gene_biotype "protein_coding"; locus_tag "C_RS00005"; old_locus_tag "c5491"; 
-NC_004431.1	Protein Homology	CDS	190	252	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; 
-NC_004431.1	Protein Homology	start_codon	190	192	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; 
-NC_004431.1	Protein Homology	stop_codon	253	255	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; 
+NC_004431.1	Protein Homology	CDS	190	252	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; db_xref "GenBank:WP_001386572.1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; exon_number "1"; 
+NC_004431.1	Protein Homology	start_codon	190	192	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; db_xref "GenBank:WP_001386572.1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; exon_number "1"; 
+NC_004431.1	Protein Homology	stop_codon	253	255	.	+	0	gene_id "C_RS00005"; transcript_id "unassigned_transcript_1"; db_xref "GenBank:WP_001386572.1"; gbkey "CDS"; gene "thrL"; inference "COORDINATES: similar to AA sequence:RefSeq:NP_414542.1"; locus_tag "C_RS00005"; product "thr operon leader peptide"; protein_id "WP_001386572.1"; transl_table "11"; exon_number "1"; 
 NC_004431.1	RefSeq	gene	453	911	.	+	.	gene_id "C_RS00010"; transcript_id ""; gbkey "Gene"; gene "tnpA"; gene_biotype "protein_coding"; locus_tag "C_RS00010"; old_locus_tag "c0002";