Mercurial > repos > iuc > ncbi_datasets

changeset 16:a6a475ed58cb draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 9a34ebfc4d6b987b71e545dcf5dbdd884cd8d88e
author iuc
date Fri, 07 Jun 2024 14:19:58 +0000
parents 198c75abbf55
children
files datasets_gene.xml datasets_genome.xml macros.xml
diffstat 3 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/datasets_gene.xml	Mon Mar 04 17:27:59 2024 +0000
+++ b/datasets_gene.xml	Fri Jun 07 14:19:58 2024 +0000
@@ -333,7 +333,7 @@
                     <param name="text_or_file" value="text"/>
                     <param name="accession" value="brca1"/>
                 </conditional>
-                <param name="taxon" value="mouse"/>
+                <param name="taxon" value="house mouse"/>
             </conditional>
             <section name="file_choices">
                 <conditional name="kingdom_cond">
--- a/datasets_genome.xml	Mon Mar 04 17:27:59 2024 +0000
+++ b/datasets_genome.xml	Fri Jun 07 14:19:58 2024 +0000
@@ -262,7 +262,7 @@
                 <param name="decompress" value="true"/>
             </section>
             <assert_stderr>
-                <has_text text="No assemblies found that match selection"/>
+                <has_text text="no genome assemblies were found"/>
             </assert_stderr>
             <!-- In the current state of the NCBI tool/DB, no output to check.
              But the returned results seem to change from time to time and it might
@@ -305,14 +305,14 @@
                     <assert_contents>
                         <has_text text="GCF_000007445.1"/>
                         <has_n_lines n="2"/>
-                        <has_n_columns n="14"/>
+                        <has_n_columns n="15"/>
                     </assert_contents>
                 </element>
                 <element name="GCF_000013305.1">
                     <assert_contents>
                         <has_text text="GCF_000013305.1"/>
                         <has_n_lines n="2"/>
-                        <has_n_columns n="14"/>
+                        <has_n_columns n="15"/>
                     </assert_contents>
                 </element>
             </output_collection>
@@ -444,7 +444,7 @@
             <output_collection name="rna_fasta" type="list" count="1">
                 <element name="GCF_000146045.2" ftype="fasta.gz">
                     <assert_contents>
-                        <has_size value="2784899" delta="2000"/>
+                        <has_size min="2700000" max="2800000"/>
                     </assert_contents>
                 </element>
             </output_collection>
--- a/macros.xml	Mon Mar 04 17:27:59 2024 +0000
+++ b/macros.xml	Fri Jun 07 14:19:58 2024 +0000
@@ -1,7 +1,7 @@
 <macros>
-    <token name="@TOOL_VERSION@">16.6.0</token>
+    <token name="@TOOL_VERSION@">16.20.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
-    <token name="@PROFILE@">22.05</token>
+    <token name="@PROFILE@">23.0</token>
     <token name="@LICENSE@">MIT</token>
     <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token>
     <token name="@SETUP_CERTIFICATES@"><![CDATA[
@@ -71,7 +71,7 @@
     </xml>
 
     <xml name="taxon_positional">
-        <param name="taxon_positional" type="text" label="Enter taxon" help="e.g. human, mouse, bos taurus, etc. or use Taxonomy ID from NCBI for greater accuracy, use species-level only not genera or larger taxa"/>
+        <param name="taxon_positional" type="text" label="Enter taxon" help="e.g. human, house mouse, bos taurus, etc. or use Taxonomy ID from NCBI for greater accuracy, use species-level only not genera or larger taxa"/>
     </xml>
 
     <xml name="ortholog">