view efetch.xml @ 0:91efba463050 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"

<tool id="ncbi_entrez_direct_efetch" name="NCBI EFetch" version="@TOOL_VERSION@">
  <description>fetch records from NCBI</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <version_command>efetch -version</version_command>
  <command detect_errors="exit_code"><![CDATA[
      @ECONTACT@
      efetch
      #if str( $db.db ) == "":
          #if str( $db.db_manual ):
              -db "${db.db_manual}"
          #end if
          #if str( $db.format ):
              -format "${db.format}"
          #end if
          #if str( $db.mode ):
              -mode "${db.mode}"
          #end if
      #else:
        #if str( $db.db ):
            -db "${db.db}"
        #end if
        #if str( $db.format.format ):
            -format "${db.format.format}"
        #end if
        #if str( $db.format.mode ):
            -mode "${db.format.mode}"
        #end if
      #end if
      #if str( $ranges.seq_start ):
          -seq_start "${ranges.seq_start}"
      #end if
      #if str( $ranges.seq_stop ):
          -seq_stop "${ranges.seq_stop}"
      #end if
      #if str( $ranges.strand ):
          -strand "${ranges.strand}"
      #end if
      #if str( $ranges.complexity ):
          -complexity "${ranges.complexity}"
      #end if
      #if str( $ranges.chr_start ):
          -chr_start "${ranges.chr_start}"
      #end if
      #if str( $ranges.chr_stop ):
          -chr_stop "${ranges.chr_stop}"
      #end if
      #if str( $query.source ) == "id":
          -id "${query.id}"
      #else:
          < '$query.input_file'
      #end if
      > '${output_result}'
  ]]>
  </command>
  <inputs>
    <conditional name="query">
      <param name="source" type="select" label="Select query source">
        <option value="history">NCBI WebEnv History</option>
        <option value="id">Direct Entry</option>
      </param>
      <when value="history">
        <param label="Input File" name="input_file" type="data" format="xml"/>
      </when>
      <when value="id">
        <param label="Query ID" name="id" type="text" argument="-id"/>
      </when>
    </conditional>

<conditional name="db">
    <param name="db" type="select" label="Database" argument="-db">
        <option value="annotinfo">annotinfo</option>
        <option value="assembly">assembly</option>
        <option value="bioproject">bioproject</option>
        <option value="biosample">biosample</option>
        <option value="biosystems">biosystems</option>
        <option value="blastdbinfo">blastdbinfo</option>
        <option value="books">books</option>
        <option value="cdd">cdd</option>
        <option value="clinvar">clinvar</option>
        <option value="clone">clone</option>
        <option value="dbvar">dbvar</option>
        <option value="gap">gap</option>
        <option value="gapplus">gapplus</option>
        <option value="gds">gds</option>
        <option value="gencoll">gencoll</option>
        <option value="gene">gene</option>
        <option value="genome">genome</option>
        <option value="geoprofiles">geoprofiles</option>
        <option value="grasp">grasp</option>
        <option value="gtr">gtr</option>
        <option value="homologene">homologene</option>
        <option value="medgen">medgen</option>
        <option value="mesh">mesh</option>
        <option value="ncbisearch">ncbisearch</option>
        <option value="nlmcatalog">nlmcatalog</option>
        <option value="nuccore">nuccore</option>
        <option value="nucest">nucest</option>
        <option value="nucgss">nucgss</option>
        <option value="nucleotide">nucleotide</option>
        <option value="omim">omim</option>
        <option value="orgtrack">orgtrack</option>
        <option value="pcassay">pcassay</option>
        <option value="pccompound">pccompound</option>
        <option value="pcsubstance">pcsubstance</option>
        <option value="pmc">pmc</option>
        <option value="popset">popset</option>
        <option value="probe">probe</option>
        <option value="protein">protein</option>
        <option value="proteinclusters">proteinclusters</option>
        <option value="pubmed">pubmed</option>
        <option value="pubmedhealth">pubmedhealth</option>
        <option value="seqannot">seqannot</option>
        <option value="sequences">sequences</option>
        <option value="snp">snp</option>
        <option value="sra">sra</option>
        <option value="structure">structure</option>
        <option value="taxonomy">taxonomy</option>
        <option value="unigene">unigene</option>
        <option value="">Manual Entry</option>
    </param>
    <when value="annotinfo">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="assembly">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="bioproject">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="biosample">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="biosystems">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="blastdbinfo">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="books">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="cdd">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="clinvar">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="clone">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="dbvar">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gap">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gapplus">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gds">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="summary">summary</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="summary">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gencoll">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gene">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="gene_table">gene_table</option>
                <option value="native">native</option>
                <option value="tabular">tabular</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="gene_table">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="asn.1">asn.1</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="tabular">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="genome">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="geoprofiles">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="grasp">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="gtr">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="homologene">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="alignmentscores">alignmentscores</option>
                <option value="docsum">docsum</option>
                <option value="fasta">fasta</option>
                <option value="full">full</option>
                <option value="homologene">homologene</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="alignmentscores">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="fasta">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="homologene">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="asn.1">asn.1</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="medgen">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="mesh">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="ncbisearch">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="nlmcatalog">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="nuccore">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="nucest">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="nucgss">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="nucleotide">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="omim">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="orgtrack">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pcassay">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pccompound">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pcsubstance">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pmc">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="medline">medline</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="medline">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="popset">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="probe">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="protein">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="proteinclusters">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pubmed">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="abstract">abstract</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="medline">medline</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="abstract">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="medline">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="asn.1">asn.1</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="pubmedhealth">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="seqannot">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="sequences">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="acc">acc</option>
                <option value="docsum">docsum</option>
                <option value="est">est</option>
                <option value="fasta">fasta</option>
                <option value="fasta_cds_aa">fasta_cds_aa</option>
                <option value="fasta_cds_na">fasta_cds_na</option>
                <option value="ft">ft</option>
                <option value="full">full</option>
                <option value="gb">gb</option>
                <option value="gbc">gbc</option>
                <option value="gbwithparts">gbwithparts</option>
                <option value="gene_fasta">gene_fasta</option>
                <option value="gp">gp</option>
                <option value="gpc">gpc</option>
                <option value="gss">gss</option>
                <option value="ipg">ipg</option>
                <option value="native">native</option>
                <option value="seqid">seqid</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="acc">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="est">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="fasta">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="fasta_cds_aa">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="fasta_cds_na">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="ft">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="gb">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="gbc">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="gbwithparts">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="gene_fasta">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="gp">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="gpc">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="gss">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="ipg">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="text">text</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="seqid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="snp">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="chr">chr</option>
                <option value="docset">docset</option>
                <option value="docsum">docsum</option>
                <option value="fasta">fasta</option>
                <option value="flt">flt</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="rsr">rsr</option>
                <option value="ssexemplar">ssexemplar</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="chr">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docset">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="fasta">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="flt">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="asn.1">asn.1</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="rsr">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="ssexemplar">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="sra">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="runinfo">runinfo</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="runinfo">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="structure">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="mmdb">mmdb</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="mmdb">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="taxonomy">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="native">native</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="native">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="xml">xml</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="unigene">
        <conditional name="format">
            <param name="format" type="select" label="Format" argument="-format">
                <option value="">None</option>
                <option value="docsum">docsum</option>
                <option value="full">full</option>
                <option value="uid">uid</option>
                <option value="url">url</option>
                <option value="xml">xml</option>
            </param>
            <when value="">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="docsum">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                    <option value="json">json</option>
                </param>
            </when>
            <when value="full">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="uid">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="url">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
            <when value="xml">
                <param name="mode" type="select" label="Mode" argument="-mode">
                    <option value="">None</option>
                </param>
            </when>
        </conditional>
    </when>
    <when value="">
        <param name="db_manual" type="text" label="Database" argument="-db"/>
        <param name="format" type="text" label="Format" argument="-format"/>
        <param name="mode" type="text" label="Mode" argument="-mode"/>
    </when>
</conditional>




    <section name="ranges" title="Set Ranges" expanded="False">
        <param label="Seq Start" name="seq_start" type="integer" optional="True" min="0" argument="-seq_start"/>
        <param label="Seq End" name="seq_stop" type="integer" optional="True" min="0" argument="-seq_stop"/>
        <param label="strand" name="strand" type="text" argument="-strand"/>
        <param label="Complexity" name="complexity" type="integer" optional="True" min="0" argument="-complexity"/>
        <param label="Chr Start" name="chr_start" type="integer" optional="True" min="0" argument="-chr_start"/>
        <param label="Chr End" name="chr_stop" type="integer" optional="True" min="0" argument="-chr_stop"/>
    </section>
  </inputs>
  <outputs>
    <data format="txt" name="output_result">
      <change_format>
        <when input="db.format" value="xml" format="xml"/>
        <when input="db.format.mode" value="xml" format="xml"/>
        <when input="db.format.mode" value="json" format="json"/>
        <when input="db.format" value="tabular" format="tabular"/>
        <when input="db.format" value="fasta" format="fasta"/>
        <when input="db.format" value="fasta_cds_aa" format="fasta"/>
        <when input="db.format" value="fasta_cds_na" format="fasta"/>
        <when input="db.format" value="gene_fasta" format="fasta"/>
      </change_format>
    </data>
  </outputs>
  <tests>
    <test>
      <param name="db|db" value=""/>
      <param name="db|db_manual" value="sra"/>
      <param name="db|format" value="runinfo"/>
      <param name="query|source" value="id"/>
      <param name="query|id" value="SRX8542266"/>
      <output name="output_result">
          <assert_contents>
              <has_text_matching expression="Run" />
          </assert_contents>
      </output>
    </test>
  </tests>
  <help><![CDATA[
NCBI Entrez EFetch
==================

Responds to a list of UIDs in a given database with the corresponding data
records in a specified format.

Example Queries
---------------

Fetch PMIDs 17284678 and 9997 as text abstracts:

+----------------------+--------------------------------------+
| Parameter            | Value                                |
+======================+======================================+
| NCBI Database to Use | PubMed                               |
+----------------------+--------------------------------------+
| ID List              | 17284678 9997                        |
+----------------------+--------------------------------------+
| Output Format        | Abstract                             |
+----------------------+--------------------------------------+

Fetch FASTA for a transcript and its protein product (GIs 312836839 and 34577063)

+----------------------+--------------------------------------+
| Parameter            | Value                                |
+======================+======================================+
| NCBI Database to Use | Protein                              |
+----------------------+--------------------------------------+
| ID List              | 312836839 34577063                   |
+----------------------+--------------------------------------+
| Output Format        | Fasta                                |
+----------------------+--------------------------------------+

@DISCLAIMER@
      ]]></help>
  <expand macro="citations"/>
</tool>