diff egquery.xml @ 0:9d18e6815994 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/egquery.xml	Thu Jul 07 02:39:52 2016 -0400
@@ -0,0 +1,59 @@
+<?xml version="1.0"?>
+<tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@">
+  <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <version_command>python egquery.py --version</version_command>
+  <command detect_errors="aggressive" interpreter="python"><![CDATA[egquery.py
+"$term"
+
+@EMAIL_ARGUMENTS@
+> $default]]></command>
+  <inputs>
+    <expand macro="dbselect"/>
+    <param label="Search Term" name="term" type="text">
+      <sanitizer>
+        <valid>
+          <add value="'"/>
+          <add value="["/>
+          <add value="]"/>
+        </valid>
+      </sanitizer>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="xml" name="default" label="EGQuery Results for $term"/>
+    <expand macro="history_out">
+      <filter>use_history</filter>
+    </expand>
+  </outputs>
+  <tests>
+    <test>
+      <param name="term" value="bacteriophage"/>
+      <output name="default" file="egquery.1.xml" compare="contains" ftype="xml"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+NCBI Entrez EGQuery
+===================
+
+Provides the number of records retrieved in all Entrez databases by a single
+text query.
+
+Example Queries
+---------------
+
++----------------------+-------------+
+| Parameter            | Value       |
++======================+=============+
+| Term                 | Cancer      |
++----------------------+-------------+
+
+@REFERENCES@
+
+@DISCLAIMER@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>