Mercurial > repos > iuc > ncbi_eutils_egquery

changeset 7:5277d159053d draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dc7c7e808d6482dd32f6bc0d9c14ac83007ca425"
author iuc
date Sat, 27 Nov 2021 09:50:50 +0000
parents fa46c83fd82a
children f4318232849e
files egquery.xml generate_macros_xml.pl macros.xml
diffstat 3 files changed, 6 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/egquery.xml	Wed Oct 06 07:58:56 2021 +0000
+++ b/egquery.xml	Sat Nov 27 09:50:50 2021 +0000
@@ -13,7 +13,6 @@
 @EMAIL_ARGUMENTS@
 > $default]]></command>
   <inputs>
-    <expand macro="dbselect"/>
     <param label="Search Term" name="term" type="text">
       <sanitizer>
         <valid>
--- a/generate_macros_xml.pl	Wed Oct 06 07:58:56 2021 +0000
+++ b/generate_macros_xml.pl	Sat Nov 27 09:50:50 2021 +0000
@@ -598,7 +598,7 @@
         <param label="History File (XML)" name="history_xml" type="data" format="xml" help="An XML file containing the WebEnv ID and Query Key referencing the search on the NCBI history server"/>
       </when>
       <when value="id_file">
-        <param label="ID File (Text)" name="id_file" type="data" format="text,tabular" help="A Text file containing one ID per line"/>
+        <param label="ID File (Text)" name="id_file" type="data" format="txt,tabular" help="A Text file containing one ID per line"/>
       </when>
       <when value="id_xml">
         <param label="ID File (XML)" name="id_xml" type="data" format="xml" help="ESearch or ELink Result XML file"/>
--- a/macros.xml	Wed Oct 06 07:58:56 2021 +0000
+++ b/macros.xml	Sat Nov 27 09:50:50 2021 +0000
@@ -1,7 +1,9 @@
 <?xml version="1.0"?>
 <macros>
   <token name="@PROFILE@">18.01</token>
-  <token name="@WRAPPER_VERSION@">1.70</token>
+  <token name="@TOOL_VERSION@">1.70</token>
+  <token name="@VERSION_SUFFIX@">2</token>
+  <token name="@WRAPPER_VERSION@">@TOOL_VERSION@+galaxy@VERSION_SUFFIX@</token>
   <token name="@EMAIL_ARGUMENTS@">
 --user_email "$__user_email__"
 #set admin_emails = ';'.join(str($__admin_users__).split(','))
@@ -118,7 +120,7 @@
         <param label="History File (XML)" name="history_xml" type="data" format="xml" help="An XML file containing the WebEnv ID and Query Key referencing the search on the NCBI history server"/>
       </when>
       <when value="id_file">
-        <param label="ID File (Text)" name="id_file" type="data" format="text,tabular" help="A Text file containing one ID per line"/>
+        <param label="ID File (Text)" name="id_file" type="data" format="txt,tabular" help="A Text file containing one ID per line"/>
       </when>
       <when value="id_xml">
         <param label="ID File (XML)" name="id_xml" type="data" format="xml" help="ESearch or ELink Result XML file"/>
@@ -145,7 +147,7 @@
   <xml name="requirements">
     <requirements>
       <requirement type="package" version="3">python</requirement>
-      <requirement type="package" version="1.70">biopython</requirement>
+      <requirement type="package" version="@TOOL_VERSION@">biopython</requirement>
     </requirements>
   </xml>
   <token name="@EFETCH_FORMAT_TOKEN@">