Mercurial > repos > iuc > ncbi_eutils_einfo
comparison einfo.xml @ 3:cd5a82a16bbf draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
author | iuc |
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date | Wed, 23 Sep 2020 09:49:45 +0000 |
parents | f6007bce569d |
children | ad0e3818b6ae |
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2:f6007bce569d | 3:cd5a82a16bbf |
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5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <version_command>python einfo.py --version</version_command> | 8 <version_command>python einfo.py --version</version_command> |
9 <command detect_errors="aggressive"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
10 python '$__tool_directory__/einfo.py' | |
11 --db $db_select | |
12 | 10 |
13 @EMAIL_ARGUMENTS@ | 11 python '$__tool_directory__/einfo.py' |
14 > $default]]></command> | 12 |
13 #if $query_type.query_type == 'Description': | |
14 --db $query_type.db_select | |
15 #end if | |
16 | |
17 @EMAIL_ARGUMENTS@ | |
18 | |
19 > $default | |
20 | |
21 ]]></command> | |
15 <inputs> | 22 <inputs> |
16 <expand macro="dbselect"/> | 23 <conditional name="query_type"> |
24 <param name="query_type" type="select" label="Database Information Request Type" help="List databases or describe a database."> | |
25 <option value="list" selected="True">List available databases</option> | |
26 <option value="Description">Describe a database</option> | |
27 </param> | |
28 <when value="list"> | |
29 <param name="db_select" type="hidden" value="Database List"/> | |
30 </when> | |
31 <when value="Description"> | |
32 <expand macro="dbselect"/> | |
33 </when> | |
34 </conditional> | |
17 </inputs> | 35 </inputs> |
18 <outputs> | 36 <outputs> |
19 <data format="xml" name="default" label="NCBI Database Information: $db_select"/> | 37 <data format="xml" name="default" label="NCBI Database Information: $query_type.db_select"/> |
20 </outputs> | 38 </outputs> |
21 <tests> | 39 <tests> |
22 <test> | 40 <test> |
41 <param name="query_type" value="Description"/> | |
23 <param name="db_select" value="pubmed"/> | 42 <param name="db_select" value="pubmed"/> |
24 <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/> | 43 <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/> |
44 </test> | |
45 <test> | |
46 <param name="query_type" value="list"/> | |
47 <param name="db_select" value="Database list"/> | |
48 <output name="default" file="einfo.dblist.xml" ftype="xml"/> | |
25 </test> | 49 </test> |
26 </tests> | 50 </tests> |
27 <help><![CDATA[ | 51 <help><![CDATA[ |
28 NCBI Entrez EInfo | 52 NCBI Entrez EInfo |
29 ================= | 53 ================= |