diff einfo.xml @ 0:32ac58827a97 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:40:06 -0400
parents
children f6007bce569d
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/einfo.xml	Thu Jul 07 02:40:06 2016 -0400
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool id="ncbi_eutils_einfo" name="NCBI EInfo" version="@WRAPPER_VERSION@">
+  <description>fetch NCBI database metadata</description>
+  <macros>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="requirements"/>
+  <version_command>python einfo.py --version</version_command>
+  <command detect_errors="aggressive" interpreter="python"><![CDATA[einfo.py
+--db $db_select
+
+@EMAIL_ARGUMENTS@
+> $default]]></command>
+  <inputs>
+    <expand macro="dbselect"/>
+  </inputs>
+  <outputs>
+    <data format="xml" name="default" label="NCBI Database Information: $db_select"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="db_select" value="pubmed"/>
+      <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/>
+    </test>
+  </tests>
+  <help><![CDATA[
+NCBI Entrez EInfo
+=================
+
+Provides the number of records indexed in each field of a given database, the
+date of the last update of the database, and the available links from the
+database to other Entrez databases.
+
+@REFERENCES@
+
+@DISCLAIMER@
+      ]]></help>
+  <expand macro="citations"/>
+</tool>