Mercurial > repos > iuc > ncbi_eutils_einfo
view esummary.py @ 0:32ac58827a97 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author | iuc |
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date | Thu, 07 Jul 2016 02:40:06 -0400 |
parents | |
children | 5b1dc5936af2 |
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#!/usr/bin/env python import argparse import eutils if __name__ == '__main__': parser = argparse.ArgumentParser(description='ESummary', epilog='') parser.add_argument('db', help='Database to use') parser.add_argument('--id_list', help='list of ids') parser.add_argument('--id', help='Comma separated individual IDs') parser.add_argument('--history_file', help='Filter existing history') parser.add_argument('--user_email', help="User email") parser.add_argument('--admin_email', help="Admin email") args = parser.parse_args() c = eutils.Client(history_file=args.history_file, user_email=args.user_email, admin_email=args.admin_email) merged_ids = c.parse_ids(args.id_list, args.id, args.history_file) payload = { 'db': args.db, } if args.history_file is not None: payload.update(c.get_history()) else: payload['id'] = ','.join(merged_ids) print c.summary(**payload)