view esummary.xml @ 2:cb5a0fe9e036 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit db33413a06c275efd4cc8e771c37facf543a2cfa"

<?xml version="1.0"?>
<tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@" profile="@PROFILE@">
  <description>fetch summary of history/ids</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements"/>
  <version_command>python esummary.py --version</version_command>
  <command detect_errors="aggressive"><![CDATA[
python '$__tool_directory__/esummary.py'
$db_select

@LIST_OR_HIST@


@EMAIL_ARGUMENTS@
> $default]]></command>
  <inputs>
    <expand macro="dbselect"/>
    <expand macro="list_or_hist"/>
  </inputs>
  <outputs>
    <data format="xml" name="default" label="Summary of NCBI Search"/>
  </outputs>
  <tests>
    <test>
      <param name="qss" value="id_list"/>
      <param name="id_list" value="10239"/>
      <param name="db_select" value="taxonomy"/>
      <output name="default" file="esummary.tax.xml" ftype="xml"/>
    </test>
  </tests>
  <help><![CDATA[
NCBI Entrez ESummary
====================

Responds to a list of UIDs from a given database with the corresponding
document summaries.

Example Queries
---------------

Search against protein:

+----------------------+--------------------------------------+
| Parameter            | Value                                |
+======================+======================================+
| NCBI Database to Use | Protein                              |
+----------------------+--------------------------------------+
| ID List              | 28800982 28628843                    |
+----------------------+--------------------------------------+

@REFERENCES@

@DISCLAIMER@
      ]]></help>
  <expand macro="citations"/>
</tool>