# HG changeset patch
# User iuc
# Date 1732155602 0
# Node ID 32d058f3462a660ac1e69fa17e0584ea1a4da36d
# Parent  ed1ef564da418aeadeb3508229ffbf0dad1ee91e
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_fcs_gx commit 9da8f86f11185d6bd75ce10de108278db2256bfd

diff -r ed1ef564da41 -r 32d058f3462a macros.xml
--- a/macros.xml	Wed Oct 09 08:53:18 2024 +0000
+++ b/macros.xml	Thu Nov 21 02:20:02 2024 +0000
@@ -6,7 +6,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.5.4</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.05</token>
     <xml name="biotools">
         <xrefs>
diff -r ed1ef564da41 -r 32d058f3462a ncbi_fcs_gx.xml
--- a/ncbi_fcs_gx.xml	Wed Oct 09 08:53:18 2024 +0000
+++ b/ncbi_fcs_gx.xml	Thu Nov 21 02:20:02 2024 +0000
@@ -12,11 +12,11 @@
         #set manifest_pathname = $mode.config_tag.fields.source_manifest
     #end if
     ## skip checksumming the database if the db_state_file exists
-    if [ ! -e '\${TMPDIR}/sync-files-completed.txt' ]; then
+    if [ ! -e "\${TMPDIR}/sync-files-completed.txt" ]; then
         ## copy data to local storage
-        mkdir -p '\${TMPDIR}' &&
-        sync_files.py get --mft '$manifest_pathname' --dir '\${TMPDIR}' > /dev/null 2>&1 &&
-        touch '\${TMPDIR}/sync-files-completed.txt';
+        mkdir -p "\${TMPDIR}" &&
+        sync_files.py get --mft '$manifest_pathname' --dir "\${TMPDIR}" > /dev/null 2>&1 &&
+        touch "\${TMPDIR}/sync-files-completed.txt";
     fi &&
     ## run gx
     GX_NUM_CORES=\${GALAXY_SLOTS:-2} run_gx.py
@@ -37,7 +37,7 @@
     #if $mode.screen_adv.div:
         --div '$mode.screen_adv.div'
     #end if
-        --gx-db '\${TMPDIR}'
+        --gx-db "\${TMPDIR}"
         --out-basename output
         --action-report true
         --generate-logfile false